Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2265 426 2e-114 seq1633 152 6e-32 seq6543 105 8e-18 seq2257 105 8e-18 seq6120 84.2 3e-11 seq6680 82.4 9e-11 >seq2265 Length=185284 Score = 426 bits (472), Expect = 2e-114 Identities = 599/838 (71%), Gaps = 11/838 (1%) Strand=Plus/Plus Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || || || || || |||||| || | | | | |||||| | | | ||||||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || |||||||| || ||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGT 179198 || || ||||| | |||| || |||||||||||||| || || |||||| | || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 179199 CTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTG 179258 | || ||||| ||||| ||||||||| | || |||| ||||||||| || ||||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 179259 TCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGA 179318 ||||| || || || ||||| || || ||||| |||||||||||||| ||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 179319 GTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAAC 179378 || ||||| || || || ||| | ||||| | || || || || || ||||| | || Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 179379 CCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCAT 179438 || || || || ||||| || | ||| | |||||| || | || || || |||||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 179439 GGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCA 179498 |||||||| || || || || | |||||||| |||| ||||||||||| | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 179499 TTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCT 179558 || | || || |||| | || || ||||| ||||| ||||| ||||| || ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 179559 CAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTT 179618 || || ||||| || || || |||||| |||||| |||||||||||||||| ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 179619 CCTGTCATGGGTCTTTGGA-----CCTCTAGCATTGGTATTATTGGTCTTGCACTTAACC 179673 || || | ||| | |||| |||| | | ||| | ||||| || || |||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGA---GTA--GTCGGTCTGGCTCTGAACC 94885 Query 179674 TTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGA 179733 | | || |||||||| ||||| || || || | || || | ||||| || || |||| Sbjct 94886 TACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGA 94945 Query 179734 CGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCG 179793 | ||||| ||||| || || ||||| || |||||| | ||| |||||||||| | | Sbjct 94946 CTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAG 95005 Query 179794 ATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||| || ||||||||| || |||| ||||| || || |||| | || |||||||| Sbjct 95006 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 152 bits (168), Expect = 6e-32 Identities = 280/403 (69%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| ||||| ||||| ||| | || | ||| || ||| ||||| ||||| || Sbjct 238546 TTCTG-AACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTG 238488 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || ||||| || || ||| | || | ||| |||| Sbjct 238487 ATGATCCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGTTGTCATTGCTACTCC 238429 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 | | | || || ||||| || |||||||| || | | || || | ||||| |||| Sbjct 238428 TTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAG 238369 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||||||||| || ||||| ||||| ||||| ||| | | ||| || || | Sbjct 238368 TATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAG 238309 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 || ||||| || || | | ||| ||| | |||||||| |||||| | | || || | Sbjct 238308 ATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGT 238249 Query 177897 CTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTAC 177954 | || || | | | ||| || || |||||||| ||| ||||||||||| || | Sbjct 238248 TCTACATTTGTTACTTGGCGTAGCT-TG-TTACATGGGCCGTAAGTGGGAACTTAGTTTC 238191 Query 177955 CGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTC 177997 || | |||||||| || ||||| ||| ||||| || |||| Sbjct 238190 CGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 238148 >seq6543 Length=70685 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 176181 GATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCG 176240 ||||| |||||| | || ||| | || || ||| || ||||| ||||| || || || Sbjct 60147 GATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGGGCTTGCTCC 60206 Query 176241 AGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGAT 176300 | ||||| || || | | || || || || || || ||| || ||||||||| Sbjct 60207 ACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGAT 60266 Query 176301 GATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGT 176360 ||| | || || | | |||| | | ||||||||||||||||| || || |||||| Sbjct 60267 GATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACTTCAGATTGT 60326 Query 176361 GTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 |||||| | ||| | || |||| |||||||||||| Sbjct 60327 GTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 60362 >seq2257 Length=219887 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 176181 GATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCG 176240 ||||| |||||| | || ||| | || || ||| || ||||| ||||| || || || Sbjct 145918 GATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGGGCTTGCTCC 145859 Query 176241 AGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGAT 176300 | ||||| || || | | || || || || || || ||| || ||||||||| Sbjct 145858 ACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGAT 145799 Query 176301 GATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGT 176360 ||| | || || | | |||| | | ||||||||||||||||| || || |||||| Sbjct 145798 GATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACTTCAGATTGT 145739 Query 176361 GTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 |||||| | ||| | || |||| |||||||||||| Sbjct 145738 GTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 145703 >seq6120 Length=94228 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 178517 GTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACC 178576 ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||| |||| Sbjct 53900 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 53959 Query 178577 TCGCTGCTG 178585 | ||||||| Sbjct 53960 TAGCTGCTG 53968 >seq6680 Length=52110 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 179463 TTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAG 179522 |||||||| |||| ||||||||||| || || | || || |||| || || Sbjct 10911 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 10852 Query 179523 ACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGC 179582 || ||||| ||||| ||||| |||| || ||| | || |||||||| | ||| | Sbjct 10851 ACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGGGTTTATTTCTTC 10792 Query 179583 AATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 |||| | |||| ||| |||||||||||| ||||| Sbjct 10791 AATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596185650231120