Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2265 471 5e-128 seq1633 136 5e-27 seq6680 98.7 1e-15 >seq2265 Length=185284 Score = 471 bits (522), Expect = 5e-128 Identities = 608/838 (73%), Gaps = 1/838 (0%) Strand=Plus/Plus Query 170775 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 170834 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 170835 CCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTG 170894 ||||| | || || ||||| || |||| ||| | || || || |||| |||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 170895 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGT 170954 || || ||||| | || | || |||||||||||||| || || |||||| | ||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 170955 CTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTC 171014 | || ||| |||| || ||||||||| | ||||||| ||| || || || ||||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 171015 AGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGA 171074 || ||||| || ||||| || || ||||| |||||||||| || ||| ||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 171075 GTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAAT 171134 || ||||| || || || ||| | ||||| | ||||| || || || |||||| ||||| Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 171135 CCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCAT 171194 ||||||||||| ||||| |||| ||| | | |||| ||| | || | || |||||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 171195 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCA 171254 |||| ||| || || |||||||| | ||||||||||||| ||||| || || | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 171255 TTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCG 171314 ||| || | ||||| | |||| || ||||| |||||||||||||| || || ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 171315 CAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTT 171374 || || ||||| || || || |||||| |||||||| |||||||||||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 171375 CCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGG 171434 || || | ||| | ||| | || ||| || | | ||||| ||||| || || | Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 171435 GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTC 171494 || ||||| ||||| |||||| | | ||||| ||||||| || || ||||| ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 171495 TATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAA 171554 || ||||| || || ||||| || |||||| ||||| | |||||||| | ||| || Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 171555 CCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || ||||||||| || | ||||| ||||| ||||| || ||||| || || |||| || Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTTAAT 95068 >seq1633 Length=412253 Score = 136 bits (150), Expect = 5e-27 Identities = 281/414 (68%), Gaps = 7/414 (2%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| ||||| ||||| |||||| |||| ||| || ||| ||||| || || || Sbjct 238546 TTCTG-AACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTG 238488 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | || | ||||| || || || |||| |||| | | |||| Sbjct 238487 ATGATCCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGTTGTCATTGCTACTCCT 238428 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 | | || || ||||| || || ||||| ||| | | ||||| | ||||| |||| Sbjct 238427 TCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGT 238368 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || ||| | | ||| || || | Sbjct 238367 ATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGA 238308 Query 169592 TGGGAAGCAGCAAGTC--TCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTG 169649 || ||||| || ||| | | ||||||||| ||||| || |||||| | | || ||| Sbjct 238307 TGAGAAGCGGC--GTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTG 238250 Query 169650 TCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | | || || | | ||| | | ||||||||| ||| |||||||| | | | Sbjct 238249 TTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCC 238190 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAG 169763 || ||||||||||||||||||| |||||| || || |||| | ||||||| Sbjct 238189 GTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCAC--CGCGGCAG 238138 >seq6680 Length=52110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171207 GAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACT 171266 |||| || ||| | ||||||||||||| ||||| || || || ||| || | ||| Sbjct 10923 GAGATTATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 10864 Query 171267 CAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGT 171326 || | ||||| || ||||| |||||||||||||| | || ||| |||| || ||||| Sbjct 10863 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGG 10804 Query 171327 ATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGT 171373 | ||| ||||| | |||||| | |||||||||| | ||||| Sbjct 10803 GTTTATTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592077687758640