Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1128 152 5e-32 seq596 134 1e-26 seq1118 87.8 2e-12 seq4739 86.0 6e-12 seq347 86.0 6e-12 >seq1128 Length=278557 Score = 152 bits (168), Expect = 5e-32 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || ||| ||||||||| ||||| ||||||| Sbjct 246358 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 246299 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753 ||||||||| |||| ||||||||||| |||||||| || || ||||| |||||| | || Sbjct 246298 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 246239 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | || ||||||||| || | || || | |||| | | | |||||||| |||| Sbjct 246238 GATCCCT-TCCTTGTCC-TGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCC 246181 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 246180 ACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| || || || |||||||| |||||||| |||| Sbjct 246586 GCCACCACGGAGGCGAAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGC 246527 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| ||||||||||| |||||||| || || | ||| || |||| || Sbjct 246526 GAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGG 246467 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || | || || | ||| | | | |||||||| ||| | Sbjct 246466 GATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGA 246408 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 246407 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 246358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 || ||| || || || ||||| | || || || || || ||||||||||||||| | Sbjct 247049 CACCACAACCACCACGGAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGT 246990 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 | || | ||||| | | || || | |||||| || || || |||| | ||| |||| Sbjct 246989 AATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGT 246930 Query 41748 CC-GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCT 41805 || | |||| | || ||||||||| ||| | || || | ||| | | ||||| Sbjct 246929 CCGGAGGGATCCCT-TCCTTGTCC-TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGA 246872 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 246871 GGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 >seq596 Length=631412 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||||||| ||||| ||||||||| ||||| ||||||| | || | |||| Sbjct 343386 AACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCTACCGTCT 343327 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 |||||||| || |||||||| || ||||| || ||||||| || | || ||||||| | Sbjct 343326 TCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGT-C 343268 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || | ||||||| ||| | | | ||||| ||||||||||||| || ||||| Sbjct 343267 TTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACCTCCAGGGTGATCGT 343208 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || ||||| |||||||| Sbjct 343207 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1118 Length=308725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || | || ||| | |||| ||||| ||| ||||||||| ||||||||||| | Sbjct 111551 GCCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGC 111610 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || || ||||| || ||||| ||||| | || ||||| | || Sbjct 111611 AAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGG 111670 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | |||||||||| ||| || |||| || | | | ||||| ||| | Sbjct 111671 GATCCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCAGAGCT---TT 111726 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| | ||| || || || || || || || ||||| || |||||||| Sbjct 111727 CAACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || |||| |||| || || ||| |||||| ||||||||||| || | || ||||| Sbjct 111333 AGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGG 111392 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || || ||||| ||||| | |||||||| | || | || ||| Sbjct 111393 CCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCC 111452 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| || | || || | || | | | ||||| ||| ||| ||||| | Sbjct 111453 TTGTCC-TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCT---CTCAACCTCGAG 111508 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| || || || || || || |||||||||||| Sbjct 111509 AGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || ||||||||| || ||||| || | Sbjct 110640 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCA 110699 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 || || ||| | || || |||||||| || || || |||| | ||| ||||| | ||| Sbjct 110700 AGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGG 110759 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | |||| | ||| | | || || | ||| ||| Sbjct 110760 ATCCCT-TCCTTGTCC-TGAATCTTTGACTTAAC-ATTAT-CAATGGTGTCCGAACTCTC 110815 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || ||||| || |||| || || || ||||||||||| Sbjct 110816 AACCTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 >seq4739 Length=93234 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || || |||| || || || |||||||||||||||||| || | Sbjct 55237 GCCACCACGGAGGCGAAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGC 55178 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || | || | || ||||||||||| | ||| || || || | ||| ||||||| || Sbjct 55177 AAGAATACGACCATCTTCGAGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGG 55118 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| ||| |||| || | | | ||| || ||| | Sbjct 55117 GATACCCTCCTTATCCTGGATCTTTGCCTTC-ACATTGTCAATAGTTTCAGAACTCTCAA 55059 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || |||||||| || || || || || || |||||||| Sbjct 55058 CATCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 55010 >seq347 Length=438793 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || |||||||||||| ||||| || | Sbjct 269909 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCA 269968 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| | || || |||||||| || || || |||| | ||| || || ||| Sbjct 269969 AGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGA 270028 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTC 41811 | | ||||||||| ||| | ||||||| || | | ||||| ||| ||| Sbjct 270029 ATCCCTTCCTTGTCC-TGAATCTTTGCTTTTACATTTTCAATGGTGTC---CGAACTCTC 270084 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || ||||| || |||| || || || ||||||||||| Sbjct 270085 AACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462209765108400