Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2412 100 6e-16 seq2858 98.7 2e-15 seq2792 98.7 2e-15 seq2570 98.7 2e-15 seq2437 98.7 2e-15 seq2404 98.7 2e-15 seq2222 98.7 2e-15 seq1814 98.7 2e-15 seq1536 98.7 2e-15 seq1270 98.7 2e-15 seq1047 98.7 2e-15 seq2659 91.5 3e-13 seq2648 86.0 1e-11 >seq2412 Length=189564 Score = 100 bits (110), Expect = 6e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||| | | |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 71345 AAATGATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 71286 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 71285 GTTCGAGCCCCACGGTGGGC 71266 >seq2858 Length=91760 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 58195 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 58136 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 58135 CCCACGGTGGGC 58124 >seq2792 Length=1552922 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1471881 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1471940 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1471941 CCCACGGTGGGC 1471952 >seq2570 Length=1555044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1273187 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1273128 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1273127 CCCACGGTGGGC 1273116 >seq2437 Length=876605 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 234627 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 234686 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 234687 CCCACGGTGGGC 234698 >seq2404 Length=885034 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 758497 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 758438 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 758437 CCCACGGTGGGC 758426 >seq2222 Length=2461652 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1473059 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1473000 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1472999 CCCACGGTGGGC 1472988 >seq1814 Length=331508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 279050 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 279109 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 279110 CCCACGGTGGGC 279121 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 280007 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 280066 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 280067 CCCACGGTGGGC 280078 >seq1536 Length=361900 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 361587 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 361646 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 361647 CCCACGGTGGGC 361658 >seq1270 Length=387263 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 215478 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 215419 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 215418 CCCACGGTGGGC 215407 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 219627 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 219568 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 219567 CCCACGGTGGGC 219556 >seq1047 Length=417705 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 266072 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 266131 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 266132 CCCACGGTGGGC 266143 >seq2659 Length=772501 Score = 91.5 bits (100), Expect = 3e-13 Identities = 344/536 (64%), Gaps = 8/536 (1%) Strand=Plus/Plus Query 230092 CTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAA 230151 |||||| ||| ||||||| ||||| ||| | || ||||| | ||||||| Sbjct 20717 CTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGT 20776 Query 230152 TGGCTAGAACCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGT 230211 ||| | || || |||| ||||| ||| | | | || | | ||||||||||| Sbjct 20777 TGGATTGATGGTGCAGAATCATTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGG 20836 Query 230212 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTG---ATG 230268 ||| | || ||||||||||| ||| ||||||| ||||| || || ||| | ||| Sbjct 20837 ATTTTCTTCTCCGGGAGTTTTTGCTCCATCTTCTGGCTT---AAAAAGCGTGGGTTAATG 20893 Query 230269 CCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTC 230328 || || | | || |||||| | || || ||||| || || ||| | || Sbjct 20894 CCGGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCATTGTGACTTT 20953 Query 230329 GGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATC 230388 | || |||| || |||| ||||| | |||| ||| | || Sbjct 20954 GCTTGTCTGTTGTACAGCTTACTGAAGAAGAAGCTGAGTGTGGAGAAGGTTCAGGGGATA 21013 Query 230389 ATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCT 230447 | | || ||||| || | ||| |||||| | ||| || |||| || || | Sbjct 21014 GTGAAGGATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGC-T 21072 Query 230448 TATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 230507 |||| |||||| ||| || ||| | |||||||| || || || || ||| | | || Sbjct 21073 GGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGTTTGTTGCAGACAGACTGTT 21132 Query 230508 TGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCT 230567 | ||| || || ||||| || || ||| | ||||||| || | | |||||| | Sbjct 21133 GGCTGCGCTCGGGTACGAAAAGGTTTACGGAGTTCAGAACCCATTCGATTGGATGGAGTT 21192 Query 230568 CATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 || || |||||||||||||| || ||||| || ||| | || | || ||||||| Sbjct 21193 GATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 21248 >seq2648 Length=778764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || ||||||||| |||||| | Sbjct 525658 GCCCGTCTAGCTCAGTTGGTAGAGCGCATGGCTCTTAACCTTGTGGTCGTGAGTTCGAAC 525599 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 525598 CCCACGGTGGGC 525587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057783163696190