Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2659 215 6e-51 >seq2659 Length=772501 Score = 215 bits (238), Expect = 6e-51 Identities = 427/626 (68%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || ||| || || || || || || || ||||||| || | ||||| || | Sbjct 20966 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 20907 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || ||||||| ||||||||||||||||| || ||||| ||||| ||| | Sbjct 20906 AGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 20848 Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 | |||||||| ||||| || ||||| ||||| | || || || | | ||| Sbjct 20847 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAAT--GATTCTG 20790 Query 24306 T--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| ||||| |||||||||| |||||||| || |||||||| || || || | Sbjct 20789 CACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAA 20730 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | ||| ||| |||| | |||| ||| |||||| | ||| || || | | |||| Sbjct 20729 TTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAG 20670 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 |||||||| || ||||||||||||||||| ||||| || || |||||| | ||| | Sbjct 20669 AGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTT 20610 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | || ||| || ||| | |||| | | || | ||| || ||||| |||||| Sbjct 20609 CAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAG 20550 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GT 24599 || || || || || | | || | || |||| | |||||| | |||| | Sbjct 20549 ATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGG 20490 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || | ||| | | | ||||| || | ||| |||||||| | ||||| || || || Sbjct 20489 TT-TCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCT 20431 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || || ||||| ||||| | |||||| | | |||| |||||| || ||| |||||| Sbjct 20430 TCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 20371 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTC 24745 | ||| |||| || || | ||| || Sbjct 20370 TCTGGGTTTTCTGTGAGAAGTGGGTC 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593699238960240