Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq958 100 2e-16 seq2448 95.1 1e-14 seq2306 91.5 1e-13 seq758 82.4 7e-11 >seq958 Length=433838 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 312133 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 312074 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | || || || || |||||||| | || ||| Sbjct 312073 CTCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 312014 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||| | || ||||| || || ||||| || |||||| | ||| | ||||| || Sbjct 312013 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 311954 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||||||||| ||||||||| Sbjct 311953 CAACATTCAGAAGGAATCCACTCTTCAC 311926 >seq2448 Length=870776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||| | | |||||||| || |||||| ||||| Sbjct 350388 GACAAAGAAGGCATCCCACCAGATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAA 350447 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | || |||||||| |||||||||||||| || ||||| ||||| | Sbjct 350448 GATGGAAGAACACTTGCAGATTACAACATTCAGAAGGAATCCACGCTTCATTTGGTGCTT 350507 Query 29175 CGATTACGAGGAGGGTA 29191 ||| | || || ||||| Sbjct 350508 CGACTTCGTGG-GGGTA 350523 >seq2306 Length=232912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || ||||| || || ||||||||| || || | Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| |||||| || || ||||| | ||| ||| || Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 176667 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | || ||||| ||||| || ||||||||| | ||| | || |||||||| Sbjct 176666 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAA 176607 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||| || || |||||| ||||| | ||||| | ||||| Sbjct 176606 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGG 176559 >seq758 Length=475707 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| |||||||| ||| || ||| | Sbjct 367807 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 367748 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | || ||| || || |||||||| | || ||| Sbjct 367747 CTCGGACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGA 367688 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||| | || || || || || || || || ||||| | ||| | ||||| || Sbjct 367687 CCAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACTA 367628 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| || ||||||||||| ||||||||| Sbjct 367627 CAACATCCAGAAGGAATCGACTCTTCAC 367600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428320271100515