Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2306 111 1e-19 seq2360 105 6e-18 seq1925 96.9 3e-15 seq1558 91.5 1e-13 >seq2306 Length=232912 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||| | || | ||| ||||||||||||||||| ||||| | Sbjct 177469 TTCCTCCCCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAGTCAG 177528 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||||| || |||||||||||||||| || || | || || || |||||||| || Sbjct 177529 CTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGG 177588 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | | | | || ||| ||| Sbjct 177589 GAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATTGTCAATGGTGTCAGAACTCTCAA 177648 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| || || | || || ||||| |||||||| Sbjct 177649 CCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTCACAAAGATTTGCAT 177697 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||||| || | || ||||||||||| || || || |||| Sbjct 176557 TTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCG 176616 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | || |||||||| ||||| ||| |||| | ||||||||||| || Sbjct 176617 CAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 176676 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| || || || || | | ||| || || ||| Sbjct 176677 GGATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAA 176736 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| |||||||||||| ||||| || || ||||| || || |||||| Sbjct 176737 CCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 176786 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||| | ||||||||||| || ||||| ||||| || Sbjct 177015 CCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 177074 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || || | || | ||||| ||||| ||| Sbjct 177075 AGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGA 177134 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | | | |||||| | ||| | Sbjct 177135 ATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACT 177194 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| |||||||| || || | || |||||||| ||||||||| Sbjct 177195 TCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATT 177242 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | |||||||| ||| | |||||||||||| || ||||| ||||| | Sbjct 176785 TTCCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 176844 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | | ||||| ||||| || || || |||| | ||||||||||| || Sbjct 176845 CCAAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGG 176904 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| || || | | | | || || | ||| Sbjct 176905 GAATACCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAA 176964 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||| ||||| | || ||||| || || ||||| Sbjct 176965 CCTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 >seq2360 Length=898569 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||| |||||||| |||||||||||||| || || || || | || Sbjct 280743 GAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATC 280684 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| ||||| || || || ||||||| ||||||||||| || | || || || || Sbjct 280683 CTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTATC 280624 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | || || | || ||||| |||||| || Sbjct 280623 CTGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACTTCCAAGGTAATCGT 280564 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || |||||||| || ||||| Sbjct 280563 CTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 280531 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| |||| ||||| || || |||||||| ||||| || || ||| Sbjct 281213 CCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCC 281154 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||||||||| || || ||| | |||| ||||||||||| || Sbjct 281153 AAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGA 281094 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC--TCCG 21126 | ||| ||||| || ||||| ||||| | | | | |||| ||| || || Sbjct 281093 ATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTAT--CCGAGCTTTCAA 281036 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| || || || || || | ||| || ||||| |||||||| Sbjct 281035 CTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| || || ||| | | || |||| ||| || || Sbjct 280499 GTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCCAACTGCTTACCA 280440 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGT-TT 21097 || | || || |||||||||||| || | || ||||| || || ||| || || Sbjct 280439 GCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATC-TTGAATTTTGGTCTT 280381 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | ||| ||| | ||| || | ||| ||||||||||| || | || Sbjct 280380 GACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 280321 Query 21158 TTTGACAAATATTTGCAT 21175 ||| ||||| |||||||| Sbjct 280320 TTTCACAAAGATTTGCAT 280303 >seq1925 Length=318408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| |||||||| ||||| |||| || | ||||||||| ||| || || Sbjct 246037 GTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCA 245978 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | ||||||||||| || | ||||||||||| ||||| || Sbjct 245977 GCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTG 245918 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| ||| || | ||| |||| ||| ||||| || || || || || Sbjct 245917 ACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTC 245858 Query 21159 TTGACAAATATTTGCATT 21176 || ||||||||||||||| Sbjct 245857 TTAACAAATATTTGCATT 245840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| | | |||||| | ||| | || |||||||| |||||||| || || | Sbjct 245613 TTCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAG 245554 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | ||||||| ||||| || || ||| | || |||||||| ||||| || Sbjct 245553 CAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGG 245494 Query 21067 GCACGCCTTCCTTGTC 21082 | | |||||||||||| Sbjct 245493 GAATGCCTTCCTTGTC 245478 >seq1558 Length=1070493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| || ||||| ||||| || || || || |||| Sbjct 239363 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 239304 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | || || | ||||||||| || | |||||||||||| Sbjct 239303 TCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCT 239244 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | ||| || || || || || | ||| || || Sbjct 239243 TGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTT 239184 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTCT 21186 || || |||| ||||| || ||||| ||||| || ||||| Sbjct 239183 TTCCCAGTTAGGGTTTTCACGAATATCTGCATCTTCTCTCTCT 239141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422243694246308