Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2360 131 3e-25 seq2770 96.9 5e-15 seq1925 96.9 5e-15 >seq2360 Length=898569 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || |||||||| || |||| ||||| Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||| ||||||||||| || || || |||||||| || Sbjct 281047 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCAG 281106 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| |||| ||||| || || || | |||||| | | || || | ||||| || Sbjct 281107 CAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAAC 281166 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| |||||||||| | || | |||||||||| Sbjct 281167 ATCCAAAAGGAATCAACCCTGCATTTGGTCCTCCGCCTCAGAGGTGGTAT 281216 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || |||||||| || || || | || ||||| | Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || ||| || || || |||||||| || || ||||| || || Sbjct 280591 GACACCATTGAGAATGTGAAGACA-AAGATACAGGATAAAGAGGGGATCCCACCAGACCA 280649 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||||||||| ||||| || || | |||||| | || || | | ||| ||||| Sbjct 280650 GCAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAA 280709 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||| ||||||||||| | ||||| | || ||||| Sbjct 280710 CATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGGGGAGGTAT 280760 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||| || || || | ||| | || || | Sbjct 280303 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGACATCT 280362 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||||||||| || ||||||||||| || || Sbjct 280363 GACACTATTGAGAATGTCAAGACCAAAATTCAAGATAAGGAGGGTATACCACCGGACCAG 280422 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || || || || || ||| | |||| ||| || || || Sbjct 280423 CAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCCGACTACAAC 280482 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || || || | ||| | | |||||||| Sbjct 280483 ATCCAAAAGGAGTCCACACTCCACTTAGTCCTCCGTCTGAGGGGTGGTAT 280532 >seq2770 Length=737149 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || ||||| |||||| | || ||| | ||| | || | Sbjct 636723 ATGCAAATTTTTGTCAAAACCCTAACTGGCAAATCCATGACTCTCGAGGTCGAGAGTTCT 636664 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| |||| || ||||||||||||||||| || || || || ||||| Sbjct 636663 GATACAATTGATAATGTTAAGACC-AAAATTCAAGATAAAGAGGGGATTCCCCCAGATCA 636605 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || |||||||| | ||| || | ||||| | | ||||||| Sbjct 636604 GCAGCGTCTGATCTTCGCTGGAAAACAGCTTGAGAATGGCCGAACCCTTGCGGATTATAG 636545 Query 124718 TATTCAAAAAGAATC 124732 || || || || || Sbjct 636544 CATCCAGAAGGAGTC 636530 >seq1925 Length=318408 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || || || | ||| ||||| Sbjct 245385 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTTGAAAGCTCC 245444 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || ||||| || || || || ||| Sbjct 245445 GACACCATTGACAATGTCAAAACCAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 245504 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || || ||||| ||||| || | ||||| | || || | | ||||| || Sbjct 245505 CAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGTACCCTTGCTGATTACAAC 245564 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || ||||| | ||| | || | |||||| ||||||| || ||| || Sbjct 245565 ATTCAGAAGGAGTCAACCCTCCATCTTGTGCTCCGTTTAAGAGGTGGAATGCAAATTT 245622 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || ||||| || | ||| | || | Sbjct 244929 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTCT 244988 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || |||||||| || || || || Sbjct 244989 GACACCATTGACAATGTCAAAACCAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 245048 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| ||| | || ||| | || || | | ||||| || Sbjct 245049 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTGCTGATTACAAC 245108 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | ||| | |||||| ||||||| || Sbjct 245109 ATCCAGAAGGAGTCGACCCTCCACCTTGTTCTTCGTTTAAGAGGTGGCAT 245158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427547638400