Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1925 122 1e-22 seq2360 116 4e-21 seq2306 102 9e-17 seq2371 96.9 4e-15 seq2770 89.7 6e-13 seq1558 82.4 9e-11 >seq1925 Length=318408 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||||||||| | ||| | ||| | || |||||| ||||| ||||||||||| Sbjct 245612 TCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 245553 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| |||| || |||||||| ||||| || || |||| ||| ||||| | || Sbjct 245552 AAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGG 245493 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||| | ||| |||| | ||||| | | | |||||| ||| | Sbjct 245492 AATGCCTTCCTTGT-CTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAA 245434 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | |||||||| || || || || ||||| ||||| || ||||| Sbjct 245433 CCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 104 bits (114), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||||||||| | |||||| || | ||| |||||||||||| ||||| || || Sbjct 245840 TCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTGC 245781 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | | || || |||||||| || || || || | || ||||| || | || Sbjct 245780 AAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGG 245721 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 43131 | || |||||| ||| ||| | || | |||| | | | ||||| |||| | Sbjct 245720 AATGCCCTCCTTATCC-TGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTC---T 245665 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || | ||||| ||||| || || | ||||| || || ||||||||| Sbjct 245664 CAACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATT 245612 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| ||||| || || || | || || |||||||| ||||| || Sbjct 244892 CTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAA 244833 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||| | | ||| | || || | | | | Sbjct 244832 GATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTAT-CTTGAATCTTCGTCTTAACAT 244774 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| || || |||| || |||||||| || || || |||| Sbjct 244773 TGTCGATGGTGTCAGAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCT 244717 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 244716 TAACGAAGATTTGCAT 244701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || |||| ||| ||| |||| || | |||||||||||| || Sbjct 246031 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAA 245972 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || | | ||||||||| | || | | ||||||||| || | || || |||| | Sbjct 245971 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGTATCTTAGTCTTGACATT 245913 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | ||||||||||| || || | ||||| Sbjct 245912 ATCGATAGTGTCTGAGCTC---TCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTT 245856 Query 43169 TACAAAGATTTGCATT 43184 ||||| ||||||||| Sbjct 245855 AACAAATATTTGCATT 245840 >seq2360 Length=898569 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | || || || | |||| ||||||||| || ||||| || || Sbjct 280529 CCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 280470 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | ||||| | ||||||||||||||| ||||| | ||||||||| | || Sbjct 280469 AGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGT 280410 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||| | | ||| |||| || |||| || | | ||||| | || || Sbjct 280409 ATACCCTCCTTAT-CTTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGAC 280351 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 280350 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || || | ||| | |||||||| ||||| || ||||||||||||||| Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | ||||| | |||||| || || || || || | ||||||||| | || Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTC---GCTCGATTC 43132 | | ||| |||||| ||| | ||||| | | || | | | ||||| ||| ||| Sbjct 280865 ATTCCCTCTTTGTCC-TGAATCTTTGTCTTAACGATATCGATAGTGTCAGAGCT---TTC 280810 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || || ||||| || || || ||||| Sbjct 280809 GACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 >seq2306 Length=232912 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || ||||| | ||||||||| | ||| |||||| || || ||||| || || Sbjct 176786 TCCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 176845 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || ||||||||||||||||| || | | ||||||||| | || Sbjct 176846 CAAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGG 176905 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 43131 | | ||||||||| ||| | || || | | | | | | | ||||| |||| | Sbjct 176906 AATACCTTCCTTGTCC-TGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTC---T 176961 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | || ||||| || || || || ||||| || || || ||||| Sbjct 176962 CAACCTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | |||| |||||| || || ||||| ||||| || || ||| | Sbjct 177026 ACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCC 177085 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | ||| ||||| | || | | |||||| Sbjct 177086 ATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTT 177145 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCG 43143 ||| ||| | || | |||| | | | || ||| ||| || || |||| | Sbjct 177146 GTCT-TGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTC---TCGACTTCGAGGG 177201 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||||||| || || || || ||||| ||||||||||||||| Sbjct 177202 TGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATT 177242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | ||| | ||| | || | || |||||||||||| ||||| ||||| Sbjct 177470 TCCTCCCCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAGTCAGC 177529 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || ||||| || || ||||| || || | |||||||| | || Sbjct 177530 TAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGG 177589 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||| ||| || |||| | | | ||||| ||| || Sbjct 177590 AATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATTGTCAATGGTGTCAGAACTC---TC 177646 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| || || || || ||||| |||||||||||||| Sbjct 177647 AACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTCACAAAGATTTGCAT 177697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| || || ||| | || || |||||||||||||| || Sbjct 176366 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAA 176425 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | | |||||||||| ||| | || | || | Sbjct 176426 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 176484 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || |||| || || || | |||||||| ||||| || | |||| Sbjct 176485 TATCAATTGTATCCGAGCTC---TCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCT 176541 Query 43168 TTACAAAGATTTGCATT 43184 | ||||| || |||||| Sbjct 176542 TCACAAAAATCTGCATT 176558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || || || | |||||| || | || ||||||||| ||||||||||| || Sbjct 176558 TCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGC 176617 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 176618 AAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 176677 Query 43076 CACGCTCTCCTTGTCCATGATTTTT 43100 | || ||||||||| ||| |||| Sbjct 176678 GATGCCTTCCTTGTCC-TGAATTTT 176701 >seq2371 Length=888473 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| || ||||| || ||||| || |||||||| | ||||| Sbjct 99675 CCTTTCTGGATGTTGTAATC-GCTAGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGAAG 99617 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||| | || |||| | | || || ||||| |||||| |||| ||| Sbjct 99616 ATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGA-CGTT 99558 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | ||| || || | ||||||||||| ||||| || || || || Sbjct 99557 GTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 99498 Query 43172 AAAGATTTGCATTTTT 43187 ||| |||||||||||| Sbjct 99497 AAATATTTGCATTTTT 99482 >seq2770 Length=737149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 42962 TCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGT 43021 ||||||||||| |||||| | | || || |||||| ||||||||||| || || || Sbjct 636075 TCTTAAACGCAGCACCAAGTAAAGGGTAGACTACTTTTGGATATTGTAATCCGCAAGGGT 636134 Query 43022 CCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCT 43081 || | | ||||| |||||||| ||||| ||||| | | |||||||| || | | Sbjct 636135 CCTCCCATCATCAAGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACC 636194 Query 43082 CTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACAT 43137 ||||| ||| ||| | || | ||||| | | | |||||| |||| || || | Sbjct 636195 TTCCTTATCC-TGAATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTC---TCAACCT 636250 Query 43138 CGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | | || || || || || || | ||||| ||||| ||||||||| Sbjct 636251 CCAAAGTTATAGTCTTCCCTGTCA-AGTCTTAACAAAAATTTGCATT 636296 >seq1558 Length=1070493 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||||| || |||| || ||||| || || ||||| Sbjct 239343 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 239284 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||| ||| || || | | Sbjct 239283 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATT 239224 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | || || ||||| || ||||| || || || Sbjct 239223 GTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCAC 239164 Query 43172 AAAGATTTGCATTTT 43186 || || ||||| || Sbjct 239163 GAATATCTGCATCTT 239149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571796063919640