Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2360 104 2e-17 seq758 102 5e-17 seq1558 100 2e-16 seq958 96.9 2e-15 seq2306 86.0 4e-12 >seq2360 Length=898569 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| || ||| ||| ||||| || ||||| || | || ||| | || Sbjct 280970 AGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCCAATGTCCGGCCATCA 280911 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| ||||| || || |||| ||||||||| || | | ||| ||||| Sbjct 280910 TCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCC 280851 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTCGACGTCCACCGTGAT 34353 |||||| ||| | | |||||| ||| || |||||| |||| ||||| Sbjct 280850 TGAATCTTTGTCTTAA----CGATATCGATAGTGTCAGAGCTTTCGACTTCCAGGGTGAT 280795 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || |||||||| ||||| || |||||||| Sbjct 280794 GGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || | |||| || ||||| ||||| ||||| | || ||| | || Sbjct 280742 AGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCC 280683 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| ||||||||||| |||| ||||||||| || | | ||| || || Sbjct 280682 TCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTATCC 280623 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||| ||| | || | || | |||| | ||| || |||| || || || Sbjct 280622 TGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACTTCCAAGGTAATCGTC 280563 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| || |||||||||||||| Sbjct 280562 TTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 280531 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||||| || | | | || ||||||||||| || ||||| Sbjct 280493 TCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAG 280434 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| || | | |||||| || || || ||| | || Sbjct 280433 ATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTTGGTCTTGACATTC 280374 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| || | |||||||| ||||| || || ||||||||| Sbjct 280373 TCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACA 280314 Query 34379 AAGATCTGCATC 34390 ||||| |||||| Sbjct 280313 AAGATTTGCATC 280302 >seq758 Length=475707 Score = 102 bits (112), Expect = 5e-17 Identities = 171/240 (71%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 34153 TTCGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTT 34212 ||| ||| | || || || || | || || ||||| | ||| ||| ||||| ||||| Sbjct 367568 TTCTTCGCA-CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTT 367626 Query 34213 GTAGTCGG--ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGC 34270 |||||||| | || || ||| |||| || | |||||| || ||||||||||| || || Sbjct 367627 GTAGTCGGCTAAAG-TG-CGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGT 367684 Query 34271 TGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATC 34329 ||||| || | | || ||||| ||| |||||||| | || | | || | || Sbjct 367685 TGGTCTGGTGGGATTCCTTCTTTGTCTTGGATC-TTTGCTTTGACATTGTCGATTGTGTC 367743 Query 34330 GGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || | || |||||||| || || || |||||||| ||||||||||| Sbjct 367744 CGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 367803 >seq1558 Length=1070493 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| || ||| |||| Sbjct 239363 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCT 239304 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| ||||| ||||||||||| || | || |||||||| Sbjct 239303 TCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCT 239244 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | ||||| || || | || || ||| Sbjct 239243 TGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTT 239184 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| || ||||||||| Sbjct 239183 TTCCCAGTTAGGGTTTTCACGAATATCTGCATC 239151 >seq958 Length=433838 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG--ACAGCTGACGGTCGT 34235 || || ||||| | ||| ||| ||||| ||||||||||||| | || || ||| | | Sbjct 311918 AGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAG-TG-CGGCCAT 311975 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295 | || | ||| || || ||||| ||||| || || ||||| || | || || |||| Sbjct 311976 CTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGT 312035 Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 | ||| || ||||| | || | | || | ||| | |||||||| || | || ||| Sbjct 312036 CCTGGATC-TTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATG 312094 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || |||||||| ||||||||||| Sbjct 312095 GTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 >seq2306 Length=232912 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| || | || || ||||| ||||||||||| | Sbjct 177015 CCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 177074 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | |||||| || ||||| || | || ||| ||||| ||| Sbjct 177075 AGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGA 177134 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | ||||| ||||| Sbjct 177135 ATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACT 177194 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || |||||||| || |||||||| ||||| Sbjct 177195 TCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 177241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060136493280