Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq558 107 4e-18 seq2659 84.2 5e-11 >seq558 Length=1338247 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||||||||| ||| ||||| || |||| ||| |||||||| || | Sbjct 393116 GACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGAGATCATATCTCCTGAAGGTC 393057 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || | | ||||| || |||||||||||||||| | || ||||| ||||| ||| Sbjct 393056 CAAGGGACAGTTGTGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGATCCAC 392997 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || ||| | || |||| ||| | ||| || | ||| | || Sbjct 392996 AAGGATGATATTGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTTCACC 392937 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || |||||||| ||||| || Sbjct 392936 CATGCTTCTCCAACTCTCTTCAATGCCGGCAC 392905 >seq2659 Length=772501 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/156 (74%), Gaps = 11/156 (7%) Strand=Plus/Minus Query 157251 GCTTGCTG-TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATC 157309 |||| ||| ||||| | ||||| |||||||| || || ||||| || || ||||| ||| Sbjct 21252 GCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATC 21193 Query 157310 ATGTCCATCCACTCGAATGGGTTGGCGCAGT-TGTACACCTTGTCGTACCCCAGCTGGTT 157368 | |||||||| ||||||||||| | | | ||| ||||| |||||||| ||| Sbjct 21192 AACTCCATCCAATCGAATGGGTT-CTGAACTCCGTAAACCTTTTCGTACCCGAGC----G 21138 Query 157369 CAGC---CAGT-AGTCCGCCACAAACTTGATGTACT 157400 |||| |||| ||| || ||||||| ||||||| Sbjct 21137 CAGCCAACAGTCTGTCTGCAACAAACTCAATGTACT 21102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073724948254784