Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2306 111 1e-19 seq2360 104 2e-17 seq1558 84.2 2e-11 seq1925 82.4 6e-11 >seq2306 Length=232912 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||||||| ||||||||||| || ||| | || || Sbjct 177033 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCTTCG 177092 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||||| ||||||||| || || | |||||||||||| | Sbjct 177093 AGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGA 177152 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | || | ||| || || | ||| || ||||| Sbjct 177153 ATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACTTCGAGGGTGATGGTCTTC 177212 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 177213 CCAGTGAGAGTCTTGACAAAGATTTGCAT 177241 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||| || || ||| ||||||||| |||||||||||| | Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || || ||||| ||||||| ||| ||||| || || Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| ||| || |||||| | | | |||| | ||| ||| Sbjct 176907 ATACCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 176966 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 176967 TCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||||||||| || || |||| ||||| |||||||||||||| Sbjct 177506 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAA 177565 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || || ||||| || || | || |||||||| || || ||| || Sbjct 177566 GATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 177625 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | || || ||||| || || || |||||||| Sbjct 177626 GTCAATGGTGTCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTCAC 177685 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 177686 AAAGATTTGCAT 177697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || || | || || || || || || || || Sbjct 176366 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAA 176425 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | |||||||||||| ||| || ||| || Sbjct 176426 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTTACATT 176485 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||| | ||| ||||||| || || |||||||| |||| |||||||| Sbjct 176486 ATCAATTGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 176545 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 176546 AAAAATCTGCAT 176557 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201 ||||||||| ||||||||||| || | ||| ||| ||| || || |||||||| Sbjct 177278 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCATCCTCG---AGCTGCTTTCCGGC 177334 Query 45202 GAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 ||| |||| || || ||||| || || | ||||||||||| |||||| ||| || Sbjct 177335 GAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGAC 177394 Query 45262 CGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTT 45321 | | | |||| | ||||| || | ||| || ||||| || || || || || Sbjct 177395 GTTGTCAATGGTGTCGGAGCTTTCCACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTT 177454 Query 45322 CACAAAGATTTGCAT 45336 |||||||| ||||| Sbjct 177455 GACAAAGATCTGCAT 177469 >seq2360 Length=898569 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||| ||||| || ||||||||||||||| ||||| Sbjct 280757 CCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 280698 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || || || || || ||||| || | || ||| ||||| || || Sbjct 280697 AGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGG 280638 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| || ||| ||| || | | | | |||| | || || Sbjct 280637 ATCCCCTCTTTATCCTGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACT 280578 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 280577 TCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 280531 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 ||||| |||| | | || ||||| || ||| |||||| || |||||||||||| | Sbjct 280529 CCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 280470 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | || |||| || || || ||||| || | || ||| ||||| || | Sbjct 280469 AGAGTT--CTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTG 280412 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||||||||| || |||||| ||| || | | | |||| ||| | Sbjct 280411 GTATACCCTCCTTATCTTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGA 280352 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | ||| || |||||||| ||||| || ||||||||||||||||| Sbjct 280351 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 ||||||||||||||||| || || ||| ||| | || |||| ||| || || || | Sbjct 281405 TCCTTCTGAATGTTGTAATCAGCCAAGGTT--CGACCATCCTCCAATTGCTTCCCTGCAA 281348 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | || | || ||||||||| || || | ||||||||||||| ||| || ||| || Sbjct 281347 AGATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGTCTTCACAT 281288 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | || | ||| ||||| | ||| || ||||| || || || ||||||| Sbjct 281287 TCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCA 281228 Query 45324 CAAAGATTTGCAT 45336 | ||||| ||||| Sbjct 281227 CGAAGATCTGCAT 281215 >seq1558 Length=1070493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 239360 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCA 239301 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||||||||| || | ||||| ||||| ||||| | || |||||||| Sbjct 239300 AGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTC 239245 >seq1925 Length=318408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/196 (69%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCAGTTGTTTTCCGG 45200 ||||||||| || |||||||| || ||| ||| || ||||| || ||||| | Sbjct 244892 CTCCTTCTGGATATTGTAGTC----AGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAG 244837 Query 45201 CGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAA 45260 | || |||| ||||| ||||| || || | |||||||| || ||| || ||||| Sbjct 244836 CAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAA 244777 Query 45261 CCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCT 45320 | | | | |||| || ||| ||||| | || || || || || || ||||||| Sbjct 244776 CATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCT 244717 Query 45321 TCACAAAGATTTGCAT 45336 | || ||||||||||| Sbjct 244716 TAACGAAGATTTGCAT 244701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060692468273