Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2659 140 3e-28 seq2628 82.4 7e-11 >seq2659 Length=772501 Score = 140 bits (154), Expect = 3e-28 Identities = 380/571 (67%), Gaps = 28/571 (5%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| ||||||||||| || || |||| || || ||||| || || ||||| Sbjct 20959 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 20900 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGA 14321 || ||||| || || || ||||| | ||| || | || ||| || | ||||| |||| Sbjct 20899 ACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGA-TGGAGCAAAAACTCCCGGAGAAGA 20841 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | || || ||||| |||||| || ||||| | || |||| || || || | Sbjct 20840 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGA-----TTCTGCACC 20786 Query 14382 AT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||| |||||| |||| || || |||| | || || |||||||| || Sbjct 20785 ATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 20726 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-T 14498 | ||| | ||| || |||| | | || || || || | ||| ||| | | Sbjct 20725 ACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAG-AAGAGAGT 20667 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||||||||||| |||||||| || || || || || ||||| ||| | |||||| | Sbjct 20666 ACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAG 20607 Query 14559 --ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 ||| || |||||| |||||| |||| | ||| || |||||| || ||| Sbjct 20606 CAACC--TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGA 20549 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT--- 14673 || || || || || | |||| | || | | |||| ||| | | ||| || Sbjct 20548 TGCGGCGAAGAAGGCAAGGATGTGGGTGAT---GAAATGCTGTTCGT--CGGAGGTTAAG 20494 Query 14674 ----TTTCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 ||||| | | | || ||| | |||||||| ||||| || | ||||| || | Sbjct 20493 ACGGTTTCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAA 20434 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTT 14759 || |||||||||| |||||| |||| |||| Sbjct 20433 GCTTCAGCTTTTTTGTACATTTCCCAGATTT 20403 >seq2628 Length=130910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||||| || ||||| || || || ||||| ||||||||| | ||||| Sbjct 123099 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 123158 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 || ||||||| |||| ||||| | ||||||||| ||| Sbjct 123159 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA 123198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482327433658840