Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2360 107 1e-18 seq1925 98.7 8e-16 seq2448 96.9 3e-15 >seq2360 Length=898569 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| ||||| || || ||||| |||||||||||||| | ||| | | ||| Sbjct 280514 AGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCA 280455 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || || |||| || || || || ||| || | || |||||||| Sbjct 280454 TCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCT 280395 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||||| | |||| || | ||||||| | Sbjct 280394 TGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTC 280335 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| ||||| ||||| |||||||| Sbjct 280334 TTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 >seq1925 Length=318408 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | ||| |||| ||||||||| || || ||||||||||||||||| || Sbjct 245840 TCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTGC 245781 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||| || | || || || ||| |||| | |||||| ||||| ||| Sbjct 245780 AAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGG 245721 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| |||||||| ||| | |||||| | | | ||||| | ||| Sbjct 245720 AATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAAC 245661 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| |||| || ||||| || || || |||||||||||| Sbjct 245660 CTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATT 245612 >seq2448 Length=870776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||||| || ||||| || ||||||||||| || || Sbjct 350521 CCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCA 350462 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||||||||| || ||| |||| | | ||||||||| || Sbjct 350461 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 350402 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || | | ||| | ||||| | | | ||||| | ||| Sbjct 350401 ATGCCTTCTTTGTCTTGGATCTTGAT-TTTGACATTGTCGATTGTGTCGGATGATTCGAC 350343 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||| ||| |||| || || | ||||| || ||||| ||||| ||| Sbjct 350342 ATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCATATTT 350291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379330070132685