Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2659 158 1e-33 seq1558 118 9e-22 seq2360 111 1e-19 seq2306 107 2e-18 seq1925 104 2e-17 seq758 93.3 4e-14 >seq2659 Length=772501 Score = 158 bits (174), Expect = 1e-33 Identities = 598/919 (65%), Gaps = 26/919 (3%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATT-TGTCATGTTTCCGATTGAATATCCAGA 57568 || |||||| | ||| || || |||||| ||| ||||| || |||||||| ||| | Sbjct 20345 GACCCACTTCTCACAGAAAACCCAGATAGATTCTGT-ATGTTCCCAATTGAATACCCACA 20403 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || ||| | ||||||||||| || ||||| ||||| ||||| | ||||||||| || || Sbjct 20404 AATCTGGGAAATGTACAAAAAAGCTGAAGCTTCGTTCTGGACTGCCGAAGAAGTCGATCT 20463 Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAA--ATTTTATTAA 57685 || | ||| | | | ||||| || || | || || || | |||| || | Sbjct 20464 TTCACAAGATGTTCGTCACTGGGAAACCGTCTTAACCTCCGACGAACAGCATTTCATCAC 20523 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || ||||||||||| || || || ||| ||||||| | | || ||| Sbjct 20524 CCACATCCTTGCCTTCTTCGCCGCATCTGACGGCATAGTTCTCGAGAATCTCGCCGGAAG 20583 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCA 57804 ||| |||| || || || | || || | ||||| || || || ||| | |||| Sbjct 20584 ATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCG-CGCTTTCTATGGCTTCCAAATCGCCA 20642 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CA 57861 |||||||| | || || |||||||| || || || | || || || | || || | Sbjct 20643 TTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAACTTATATCAAAGATTCTA 20702 Query 57862 ACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGG 57921 || | |||| | || || || || ||||| || || | ||||||| Sbjct 20703 AC--CTTAAAACCCA-TCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGG 20759 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | || ||| | | ||||| | | | | | | || || |||||| |||| | Sbjct 20760 CTGATTGGGCTCTTCGTTGGATTGATGGTG---CAGAATCATTTGCTGAGAGGTTAATTG 20816 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || ||||| || ||||| || || || ||| | || || ||| | | Sbjct 20817 CTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTTGCTCCATCTTCTGGCTTA 20876 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 | || || || | ||||| || | || || |||||| |||||||||| ||||| | Sbjct 20877 AAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAG 20936 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTAC-TCTCACATTGTCAATAAACCGACGCGG 58160 | || ||| ||| ||||| || || ||||| || || | || || | || | Sbjct 20937 GGCTTCATTGTGACTTTGCTTGTCTGTTGTACAGCTTAC-TGAAGAAGAAGCTGAGTGTG 20995 Query 58161 GATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 || | | || || || | | || || |||| ||||| ||||| || || | Sbjct 20996 GA--GAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATCGAGCGAGAGTTCGTAACTG 21053 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | || || |||||| || | || |||||| ||| ||||| |||||||||||| Sbjct 21054 ATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGT 21113 Query 58279 TTGTTGCCGACAGACT-TTTGCT-CGAACTGATTGGAGAGCGTCATTACAACACGAAAAA 58336 ||||||| |||||||| || ||| || | | | || | || |||| | || Sbjct 21114 TTGTTGCAGACAGACTGTTGGCTGCGCTCGGGTACGAAAAGGT--TTACGGAGTTCAGAA 21171 Query 58337 TCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396 || || |||| ||| | ||||||| || | || ||||| || || || || || | Sbjct 21172 CCCATTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAG 21231 Query 58397 aGTTAGCGAATATCAAAAA 58415 |||| | || ||||| ||| Sbjct 21232 AGTTGGGGAGTATCAGAAA 21250 >seq1558 Length=1070493 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || ||||| || ||| | || |||||| | Sbjct 239149 AAGATGCAGATATTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAGGTTGAATCC 239208 Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || ||| | |||||||||||| | || || || Sbjct 239209 TCAGACACCATCGACAATGTGAAGACTAAGA-TCCAAGACAAGGAAGGCATCCCTCCAGA 239267 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||| || |||||| | |||||| ||| | ||| || Sbjct 239268 CCAGCAGCGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTCGCCGACTA 239327 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || ||||| ||||| ||||| ||| | || ||||| ||| Sbjct 239328 CAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGTCTCAGGGGTGGT 239379 >seq2360 Length=898569 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||||||||| ||||| ||| | || |||||| | ||| Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || ||| || ||| ||| || || || | || || ||||| Sbjct 280591 GACACCATTGAGAATGTGAAGACAAAG-ATACAGGATAAAGAGGGGATCCCACCAGACCA 280649 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| || || ||| | || || |||| | || ||||| Sbjct 280650 GCAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAA 280709 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || ||||| ||| |||| || | ||||||| |||| Sbjct 280710 CATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGGGGAGGTA 280759 >seq2306 Length=232912 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || || || || ||| | || ||||| || Sbjct 176785 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTCG 176726 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| ||||||||||||| | || || |||||| Sbjct 176725 GACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 176666 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||| ||||||| | |||| | ||||| || Sbjct 176665 CAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAAT 176606 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || ||||| |||| || || ||||||| || Sbjct 176605 ATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGG 176559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || || || | || ||||| ||| Sbjct 177013 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 176954 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||||||| | || || |||||| Sbjct 176953 GACACCATTGACAATGTTAAGACGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 176894 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| || ||| | || || | ||| || ||| || ||| Sbjct 176893 CAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTTTGGCCGACTACAAC 176834 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || ||||| ||| |||| || | ||||||| || Sbjct 176833 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 176787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || ||||| |||| ||||| || Sbjct 177697 ATGCAAATCTTTGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTTGAGAGTTCT 177638 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||| | || || ||||| Sbjct 177637 GACACCATTGACAATGTCAAGACTAAGA-TCCAAGACAAGGAAGGAATTCCCCCAGACCA 177579 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || ||||| || |||||| |||| ||| || | ||| || || | Sbjct 177578 GCAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCT-AGCTGACTACA 177520 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||| || || ||||| || || || || | || ||||| || Sbjct 177519 ACATTCAAAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGGGGAGG 177471 >seq1925 Length=318408 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || ||||| |||||| | || || || || Sbjct 245841 ATGCAAATATTTGTTAAGACCTTGACTGGGAAAACCATCACCTTGGAGGTCGAGAGCTCA 245900 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || ||| || |||||||||||| | || || ||||| Sbjct 245901 GACACTATCGATAATGTCAAGACTAAGA-TACAGGACAAGGAAGGAATTCCTCCTGACCA 245959 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| || |||||||| ||| ||| || || || || Sbjct 245960 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGACGGGCGCACTTTGGCAGACTACAA 246019 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || ||||| || ||||| || || ||| Sbjct 246020 CATTCAGAAGGAATCCACCCTTCACCTTGTCCTT 246053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| || || || || || |||||| | || |||||| || Sbjct 245384 CATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTTGAAAGCTC 245443 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | |||||| | ||| |||||||||||| | || || ||||| Sbjct 245444 CGACACCATTGACAATGTCAAAACCAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 245503 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| || ||| | || ||| || | ||||| || Sbjct 245504 ACAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGTACCCTTGCTGATTACAA 245563 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || ||||| || || Sbjct 245564 CATTCAGAAGGAGTCAACCCTCCATCTTGTGCT 245596 >seq758 Length=475707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || ||||| || ||| | || || ||| | Sbjct 367807 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 367748 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||| | |||||| || ||| | ||||| ||||| | || || | Sbjct 367747 CTCGGACACAATCGACAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGAATCCCACCAG 367689 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || || || || ||||| || || ||| | |||||| ||| | ||| | Sbjct 367688 ACCAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACT 367629 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || || |||||||||||||| || || ||| Sbjct 367628 ACAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTT 367591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749611322960