Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2659 215 6e-51 >seq2659 Length=772501 Score = 215 bits (238), Expect = 6e-51 Identities = 417/609 (68%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || ||| || || || || || || || ||||||| || | ||||| || | Sbjct 20966 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 20907 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC-G 33692 | || | || ||||||| ||||||||||||||||| || ||||| || || ||| | Sbjct 20906 AGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 20848 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || ||||| || ||||| || |||||| ||||| | ||||| || | | ||| Sbjct 20847 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAAT--GATTCTG 20790 Query 33753 T--CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| |||||||||| |||||||| || |||||||| || ||||| | Sbjct 20789 CACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAA 20730 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | ||| ||| |||| | |||| ||| |||||| | |||||| || | | |||| Sbjct 20729 TTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAG 20670 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||||||| || ||||||||||||||||| || || || || |||||| | ||| | Sbjct 20669 AGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTT 20610 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 | | || ||| || ||| | |||| | | || | ||| || ||||| || ||| Sbjct 20609 CAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAG 20550 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GT 34046 || || || || || | | || | || |||| | |||||| | |||| | Sbjct 20549 ATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGG 20490 Query 34047 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 34106 || | ||| | | | ||||| || | ||| |||||||| | ||||| || || || Sbjct 20489 TT-TCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCT 20431 Query 34107 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 34166 || || ||||| ||||| | |||||| | | |||| |||||||| ||| |||||| Sbjct 20430 TCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 20371 Query 34167 TTTGGATTT 34175 | ||| ||| Sbjct 20370 TCTGGGTTT 20362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793879494640