Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2659 120 3e-22 >seq2659 Length=772501 Score = 120 bits (132), Expect = 3e-22 Identities = 571/893 (64%), Gaps = 31/893 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| || | ||||| || | || || ||||||||||| |||| || || || | Sbjct 21249 TTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | || || || | || | | || ||||| | || | | | | || Sbjct 21190 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAA 21131 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 | ||| ||||| || || || || |||||| ||| | ||| ||||| || | || Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | |||||||| ||| | || | ||||| || |||| || ||||| | | ||| Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 11578 CGACGTTATAACTTC------CTTAGATGGTGGATGTAATAAA-TGTTTAAACATTAAAC 11630 | | | | |||| || || | | | | ||| ||| ||| | || Sbjct 21010 CCCC--TGAACCTTCTCCACACTCAGCTTCTTCTTC-AGTAAGCTGT----ACAACAGAC 20958 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||| |||||||| | |||||||||| ||| || || || || || ||||| | Sbjct 20957 AAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAAC 20898 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAAC---CAGAAAAGA 11747 | ||||| || || || ||||| | ||| || || | |||||| ||| | || |||| Sbjct 20897 CCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGG-AGCAAA--AACTCCCGGAGAAGA 20841 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT- 11806 | || || || ||| ||||| || | || || || || || | ||| || Sbjct 20840 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTC--TGCACCATC 20783 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| ||||||||||| ||||| || || || || ||||| || || Sbjct 20782 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 20723 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | ||| |||| || |||| | | ||| || |||| | | | ||||| Sbjct 20722 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACAT 20663 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 ||| || ||||| ||||| || || ||||| || ||||||||| || || || | | Sbjct 20662 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 20603 Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || ||| |||||| | || | |||||| || || || ||| | | Sbjct 20602 CTGGACCTCTTTCAT-GAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGG 20544 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCC 12101 | || || || || || || | || || | | |||||| ||||| | |||| Sbjct 20543 CGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCC 20484 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| ||| | ||| |||||||| | ||||| || || | | || Sbjct 20483 AGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTT 20424 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 ||| ||||||| |||||| | | || | ||| ||||| ||| ||| ||| Sbjct 20423 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 20371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468507154184720