Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2659 217 2e-51 >seq2659 Length=772501 Score = 217 bits (240), Expect = 2e-51 Identities = 602/915 (66%), Gaps = 21/915 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || || || || | || || || |||||||| || |||| | || || Sbjct 21250 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||||||||| || ||| |||| |||| | || | ||| | Sbjct 21190 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAA 21131 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || ||| ||||| ||||| || || || |||||| ||||| ||||| || | || Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || ||||| || |||| | || ||| | || ||| ||| || || | | || Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATG 36161 || | || ||||| | | | | ||| ||| ||| || ||| | Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 20955 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | || || || || || || ||||||| || | ||||| || || || | || | Sbjct 20954 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 20895 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATT 36280 |||||| ||||||||||||||||| || ||||| ||||| ||| | | |||||||| Sbjct 20894 GCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 20836 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATC 36337 ||||| || ||||| ||||| | ||||| || | | |||| ||| ||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTCTGCACCATCA---ATC 20779 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || |||||||||| |||||||| || |||||||| || || || || ||| ||| Sbjct 20778 CAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAA 20719 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 |||| | |||| ||| |||||| | ||| || || | | |||| |||||||| Sbjct 20718 AGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCA 20659 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || ||||||||||||||||| ||||| || || |||||| | ||| || | || ||| Sbjct 20658 GAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGG 20599 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 || ||| | |||| | | || | ||| || ||||| |||||| || || || Sbjct 20598 ACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAG 20539 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----GTTTATTCCAATC 36633 || || | | || | || |||| | ||||| | |||| | || | ||| | Sbjct 20538 AAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTG 20480 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | | ||||| || | ||| |||||||| | ||||| || || || || || ||||| Sbjct 20479 ACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTT 20420 Query 36694 ATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTT 36753 ||||| | |||||| | | |||| |||||| || ||| ||||||| | | |||| Sbjct 20419 GTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTC 20360 Query 36754 TGCAAGGATTGGTTC 36768 || || | ||| || Sbjct 20359 TGTGAGAAGTGGGTC 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148011566920