Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1925 98.7 1e-15 seq2448 91.5 1e-13 seq958 86.0 6e-12 seq758 86.0 6e-12 >seq1925 Length=318408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || ||||||| |||||||| ||||||||||| || || Sbjct 245839 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTGCA 245780 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| || |||||||| || || ||| |||||| | ||||||||| || || Sbjct 245779 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGGA 245720 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || | || | | || | ||||| | | ||| || Sbjct 245719 ATGCCCTCCTTATC-CTGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAAC 245661 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || || ||||| || || ||||| |||||||| Sbjct 245660 CTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCAT 245613 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || || || || |||||||| || || Sbjct 246068 GCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 246009 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || | ||| ||||||||| | |||| | ||||| || ||||| Sbjct 246008 CAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 245949 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| || | || || || | | || | ||||| | | ||| | Sbjct 245948 AATTCCTTCCTTGTCC-TGTATCTTAGTCTTGACATTATCGATAGTGTCTGAGCTCTCGA 245890 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || || || ||||| || || || ||||||||||| Sbjct 245889 CCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCAT 245841 >seq2448 Length=870776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||| || || || |||||||| ||||| | ||| || ||||| Sbjct 350503 ACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 350444 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| |||||| |||| | ||||| ||||| || || |||||||||||||| | Sbjct 350443 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 350384 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | |||||||| | || || || | ||| | || || Sbjct 350383 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTTA 350324 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||||| ||||| || |||||| Sbjct 350323 CCAGTTAGGGTTTTCACGAAAATCTGCATA 350294 >seq958 Length=433838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || || || || |||||||| || ||| Sbjct 311903 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCT 311962 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || |||| |||||||| || || || || Sbjct 311963 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 312022 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||| | | || | || || | || || || Sbjct 312023 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGACT 312082 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 312083 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 >seq758 Length=475707 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || || || || || ||||| || ||| Sbjct 367577 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCT 367636 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || || || | || || ||||| || || || || Sbjct 367637 AAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGG 367696 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| ||| | | || | |||||| | || || ||| Sbjct 367697 ATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTGTCCGAGGATTCTACC 367756 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 367757 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 367803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045316989600