Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2659 226 4e-54 >seq2659 Length=772501 Score = 226 bits (250), Expect = 4e-54 Identities = 417/608 (69%), Gaps = 9/608 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| || || || || || || || ||||||| || || ||||| || | Sbjct 20966 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 20907 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || | || ||||||| ||||||||||||||||| || ||||| ||| ||| | Sbjct 20906 AGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGG 20847 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 | ||||| || ||||| || ||||| |||| | ||||| || | || ||| Sbjct 20846 AGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA--TGATTCTGC 20789 Query 50132 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| ||||| |||||||||| |||||||| || |||||||| || ||||| || Sbjct 20788 ACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAAT 20729 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||| ||| |||| | |||| ||| |||||| | |||||| || | | |||| Sbjct 20728 TGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGA 20669 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||||| || ||||||||||||||||| || || || || |||||| | ||| || Sbjct 20668 GTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTC 20609 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | || ||| || ||| | |||| | | || | ||| || ||||| |||||| Sbjct 20608 AGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGA 20549 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----GTT 50425 || || || || || | | || | || ||||| | ||||| || |||| | | Sbjct 20548 TGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGT 20489 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | | ||| | | | ||||| || | ||| |||||||| | ||||| || || || | Sbjct 20488 T-TCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTT 20430 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 | || ||||| ||||| | |||||| | | |||| |||||||| ||| ||||||| Sbjct 20429 CAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTAT 20370 Query 50546 TTGGATTT 50553 ||| ||| Sbjct 20369 CTGGGTTT 20362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241748201320