Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2659 125 7e-24 seq2628 82.4 7e-11 >seq2659 Length=772501 Score = 125 bits (138), Expect = 7e-24 Identities = 375/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| ||||||||||| || || |||| || || ||||| || || ||||| Sbjct 20959 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 20900 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-AAATGACCCGGAAAAGA 13989 || ||||| || || || ||||| | ||| || | || ||| ||| |||||| |||| Sbjct 20899 ACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGA-TGGAGCAAAAACTCCCGGAGAAGA 20841 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 | || || ||||| |||||| || ||||| | || |||| || || || | Sbjct 20840 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGA-----TTCTGCACC 20786 Query 14050 AT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||| |||||| |||| || || |||| | || || |||||||| || Sbjct 20785 ATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 20726 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-T 14166 | ||| | || || |||| | | || || || || | ||| ||| | | Sbjct 20725 ACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAG-AAGAGAGT 20667 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC- 14224 ||||||||||||| |||||||| || || || || || ||||| ||||| | |||||| Sbjct 20666 ACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC-GCGAGCTTCA 20608 Query 14225 -CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| || || || |||||| |||| | ||| || |||||| || ||| Sbjct 20607 GCAACC--TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAG 20550 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTT 14340 || || || || || | |||| | || || | || || || | | || Sbjct 20549 ATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGG 20490 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 ||| ||| | | ||| | |||||||| ||||| || | ||||| || ||| Sbjct 20489 TTTCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTT 20430 Query 14401 CAGCTTTTTTATACATTACCCATATTT 14427 |||||||||| |||||| |||| |||| Sbjct 20429 CAGCTTTTTTGTACATTTCCCAGATTT 20403 >seq2628 Length=130910 Score = 82.4 bits (90), Expect = 7e-11 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||| || ||||| || || || ||||| ||||||||| | ||||| Sbjct 123099 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 123158 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||||||| |||| ||||| | ||||||||| ||| |||| Sbjct 123159 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 123202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709932244200