Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2448 122 7e-23 seq2306 84.2 2e-11 >seq2448 Length=870776 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||||||||| | ||| ||||| || | |||||||| | Sbjct 350521 CCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCA 350462 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 350461 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 350402 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||||| || | | ||||||| | ||||| Sbjct 350401 ATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACA 350342 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| ||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 350341 TCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCATATT 350292 >seq2306 Length=232912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| |||||| || | ||||| |||| ||| ||||| | || || Sbjct 176804 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTC 176863 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || || || |||||||| | ||| || || | || | |||||| || || || Sbjct 176864 GAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTC-CT 176922 Query 43020 G-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTT 43077 | ||| | || || || ||| |||||| ||| ||| || || | || || || Sbjct 176923 GAATCTTCGTCTTAACATTGTCAATGGTGTCG-GAGCTCTCAACCTCCAAAGTAATGGTC 176981 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || || || || ||||| ||||| Sbjct 176982 TTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355595750754