Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2659 221 2e-52 >seq2659 Length=772501 Score = 221 bits (244), Expect = 2e-52 Identities = 417/609 (68%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| || || || || || || || || |||| || | ||||| || | Sbjct 20966 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 20907 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || | || ||||||| ||||||||||||||||| || || || ||||| ||| | Sbjct 20906 AGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 20848 Query 42177 AA-AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCA 42232 | ||||| || ||||| || ||||| ||||| | ||||| || | | ||| Sbjct 20847 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTCTGCA 20788 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| |||||||||| |||||||| || |||||||| || ||||| Sbjct 20787 CCATCA---ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCA 20731 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || ||| ||| |||| | |||| ||| |||||| | ||| || || | | |||| Sbjct 20730 ATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGA 20671 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || ||||||||||||||||| || || || || |||||| | || Sbjct 20670 GAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCT 20611 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | |||||| || ||| | |||| | | || | ||| ||| ||||| |||||| Sbjct 20610 TCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCA 20551 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---T 42529 || || || || || | | || | || |||| | |||||| | ||||| Sbjct 20550 GATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACG 20491 Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 | | ||| | | | ||||| || | ||| |||||||| | ||||| || || ||| Sbjct 20490 GTTTCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCT 20431 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || || ||||| ||||| | |||||| | | |||| ||||||||| ||| |||||| Sbjct 20430 TCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 20371 Query 42650 TTTGGATTT 42658 | ||| ||| Sbjct 20370 TCTGGGTTT 20362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113923219880