Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2448 86.0 6e-12 seq958 86.0 6e-12 >seq2448 Length=870776 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || ||||| || || ||||||||||| | ||| || ||||| Sbjct 350503 ACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 350444 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| |||| | ||||| ||||| || || |||||||||||||| Sbjct 350443 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 350384 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | ||||| | | ||| || || | || | || || Sbjct 350383 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTTA 350324 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| ||||| || |||||| Sbjct 350323 CCAGTTAGGGTTTTCACGAAAATCTGCATA 350294 >seq958 Length=433838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || ||||| || || |||||||| ||| Sbjct 311903 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCT 311962 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||| ||||| || || |||| |||||||| || || || || Sbjct 311963 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 312022 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || ||| | | || | || |||| || ||| ||| Sbjct 312023 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGACT 312082 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| ||||| || ||||| Sbjct 312083 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506995304570160