Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2448 145 6e-30 seq2371 123 2e-23 seq958 107 1e-18 seq1925 102 6e-17 seq758 102 6e-17 seq2770 84.2 2e-11 seq2360 82.4 6e-11 seq2306 82.4 6e-11 >seq2448 Length=870776 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| ||||| || || || ||||||||||| || |||| | ||||| Sbjct 350503 ACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 350444 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | || || |||||||| || ||| || ||||||||||| Sbjct 350443 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 350384 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| | || ||| | || || || ||| ||| ||||||||||| ||||||||| Sbjct 350383 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTTA 350324 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || || ||||| || ||||| ||||||||||| Sbjct 350323 CCAGTTAGGGTTTTCACGAAAATCTGCATATTTGA 350289 >seq2371 Length=888473 Score = 123 bits (136), Expect = 2e-23 Identities = 147/198 (74%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 15171 AATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15230 || |||| || |||||||||||||| ||| | | ||||||| | || || | ||| Sbjct 99677 AACCTTTCTGGATGTTGTAATCGCT-AGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGA 99619 Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 | || | ||| |||| ||| | |||| |||||||||||| ||||| ||| || Sbjct 99618 AGATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGT 99559 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 | | |||||||| ||| |||| || || | ||| ||||||||||| || |||||||| | Sbjct 99558 TGTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCA 99499 Query 15351 CAAAAATTTGCATATTTG 15368 |||| |||||||| |||| Sbjct 99498 CAAATATTTGCATTTTTG 99481 >seq958 Length=433838 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || |||||||| ||| || | | | | ||||| | ||| Sbjct 311927 TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 311986 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | |||||||||||| ||| || ||||||||||| || ||| Sbjct 311987 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG 312046 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || |||||||| ||| || |||| ||| ||||||||||| || Sbjct 312047 GCTTTGACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTT 312106 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| || || || ||||| ||| Sbjct 312107 AGGGTTTTCACGAAGATCTGCATTTTT 312133 >seq1925 Length=318408 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| || | | ||| | || ||||| || || || || ||||||||||| Sbjct 245157 TGCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAG 245098 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| | ||| || ||||| | ||||| | || ||||| | Sbjct 245097 CAAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 245038 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| ||||||| | || ||| | || ||||| || ||| || | Sbjct 245037 GAATACCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAATTCTCGA 244978 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| || || || || || || || || |||||||| ||||| Sbjct 244977 CCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| ||||| || || || || ||||||||||| Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||| || | || || ||||| | |||| | |||||||| ||| Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| | || ||| | || ||||| ||| |||| || Sbjct 245491 ATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 245432 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || |||||||| ||||| Sbjct 245431 TCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || |||||||| || | | | | | |||| || || || Sbjct 246043 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGC 245984 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || ||||| ||||||||||| ||||| || || Sbjct 245983 TTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTA 245924 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || || || || | || || || ||||| |||||||| || ||| Sbjct 245923 GTCTTGACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTC 245864 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 245863 AAGGTCTTAACAAATATTTGCAT 245841 >seq758 Length=475707 Score = 102 bits (112), Expect = 6e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| || | | | ||||||| | || Sbjct 367601 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGC 367660 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | || | ||||||||||| ||| |||||||||||||| || ||| Sbjct 367661 TTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTT 367720 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || |||||| |||| ||| ||||||||||| || Sbjct 367721 GCT-TTGACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGT 367779 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| || || || ||||| ||| Sbjct 367780 TAGGGTTTTCACGAAGATCTGCATTTTT 367807 >seq2770 Length=737149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 ||||| |||||| | |||| ||| || || || ||||| || ||||| || |||| Sbjct 636578 TGTTTTCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATCCCCTCTTTATCTTGAATT 636637 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| |||| ||| | || || ||||| | | || || || | || |||| ||| || Sbjct 636638 TTGGTCTTAACATTATCAATTGTATCAGAACTCTCGACCTCGAGAGTCATGGATTTGCCA 636697 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| |||||||||||||| Sbjct 636698 GTTAGGGTTTTGACAAAAATTTGCAT 636723 >seq2360 Length=898569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | ||| ||||| || || || || || || ||||| || || Sbjct 280757 CCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 280698 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || | || || || ||| | || | | || ||||| ||| Sbjct 280697 AGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGG 280638 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || || || |||| ||| | || ||||| ||| | |||| || Sbjct 280637 ATCCCCTCTTTATCCTGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACT 280578 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || ||||||||||| || ||||| || |||||| Sbjct 280577 TCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCATA 280530 >seq2306 Length=232912 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| |||||||| || ||| ||| |||| || | ||| Sbjct 177495 TGGAGAGTTGACTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGT 177554 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| | ||| ||||| ||||||||||| ||||| || || Sbjct 177555 TTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTA 177614 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| | || ||||| || | | || || || | || ||||| || || || Sbjct 177615 GTCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCAGTA 177674 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 177675 AGGGTCTTCACAAAGATTTGCAT 177697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362165900440233