Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2306 109 5e-19 seq2360 96.9 3e-15 >seq2306 Length=232912 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | ||||| ||| | || ||||||||||| ||||||||||||| Sbjct 176557 TTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCG 176616 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||||||| || || ||| |||| | |||||||| || || Sbjct 176617 CAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 176676 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| ||||||| || || | | ||| || || | ||| Sbjct 176677 GGATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAA 176736 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||||||| || || || || || ||||| ||||| |||||| Sbjct 176737 CCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 176786 >seq2360 Length=898569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||||| | ||| | |||||| ||||| ||||| || ||||||||||| ||| Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| || || ||| | || || |||||||| || || Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAGGCTCCG- 18992 | ||||||||||| ||| || ||| || || ||| ||| || || | || Sbjct 280865 ATTCCCTCTTTGTCCTGAATCTT-TGTCTTAACGATATCGATAGTGTC-AGAGCTTTCGA 280808 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | ||| || || ||||| ||||| Sbjct 280807 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557576498122