Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2360 93.3 3e-14 seq2770 82.4 5e-11 >seq2360 Length=898569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| ||||| | ||| | |||||||| || || || || ||||||||||||| | Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | |||||||| ||||| || ||| || | | |||||||| | || Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || || ||||| || |||| ||| || || | | || ||||| | || || Sbjct 280865 ATTCCCTCTTTGTCCTGAATC-TTTGTCTTAACGATATCGATAGTGTCAGAGCTTTCGAC 280807 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| || ||||| || |||||||| ||||| Sbjct 280806 TTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 >seq2770 Length=737149 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/226 (69%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 33148 TCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATT 33207 |||||| |||| |||||| | | || |||| ||||| ||||||||||| | ||| Sbjct 636075 TCTTAAACGCAGCACCAAGTAAAGGGTAGACTACTTTTGGATATTGTAATCCG-CAA--- 636130 Query 33208 GAGT----TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTA 33263 | || ||||| | ||||| ||| |||||| || | |||||||||| ||| | Sbjct 636131 GGGTCCTCCCATCATCAAGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAA 636190 Query 33264 TGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGT 33323 | ||||| || || |||| ||| || | | ||||||||| | | ||| | Sbjct 636191 TACCTTCCTTATCCTGAATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTCTCAACCT 636250 Query 33324 CCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||||| || || || || | ||| || || ||||||||||| Sbjct 636251 CCAAAGTTATAGTCTTCCCTGTCA-AGTCTTAACAAAAATTTGCAT 636295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318765894187674