Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2770 82.4 5e-11 >seq2770 Length=737149 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | || || || ||||||||||||| |||||||||| | || | |||||| | Sbjct 636140 CATCATCAAGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACCTTCCT 636199 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || |||||| || ||| || |||| ||| || || | || | Sbjct 636200 TATCCTGAATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTCTCAACCTCCAAAGTTA 636259 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || | | ||||||| ||||| |||||||| Sbjct 636260 TAGTCTTCCCTG-TCAAGTCTTAACAAAAATTTGCAT 636295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354764572233924