Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2448 87.8 2e-12 >seq2448 Length=870776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || ||||| || || ||||||||||| | | ||| | |||||| Sbjct 350504 CACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 350445 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||||||||| || ||| | || |||| | |||||||| || | |||||||||||| Sbjct 350444 CAATTGTTTCCCAGCAAAGATTAAGCGT-TGTTGATCTGGTGGGATGCCTTCTTTGTCTT 350386 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||| || | | | | | ||| | ||| || | ||| ||||||| Sbjct 350385 GGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTT 350326 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 | || || | ||||| || ||||| ||||| ||| Sbjct 350325 TACCAGTTAGGGTTTTCACGAAAATCTGCATATTT 350291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571792364653