Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2306 104 2e-17 seq2360 86.0 5e-12 >seq2306 Length=232912 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| || ||| |||||| || |||||||| || ||| Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| || |||| || | |||||| || || Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| ||| ||| ||| | | | ||||| |||| ||| | Sbjct 176907 ATACCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 176966 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| || || || || ||||||||||| Sbjct 176967 TCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || ||||| || ||||||||| || |||||||| || Sbjct 176559 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGC- 176617 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || || ||||||||||| ||| | |||| || | |||||| || || Sbjct 176618 AAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 176677 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||||||| ||||| | | ||||| || | | ||| Sbjct 176678 GATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAAC 176737 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| | || || || ||||||||||| Sbjct 176738 CTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| |||||||||||| |||||| || |||||||| |||| Sbjct 177014 ACCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAG- 177072 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || ||| | || || |||||||| ||| || | || || | ||| || || | Sbjct 177073 CAAGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGG 177132 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-C 48676 | | || |||||||| ||| || ||||| | | || ||||||| || ||| | Sbjct 177133 GAATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGG-AG-CTCTC 177190 Query 48677 GTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | | |||| || ||||| || || |||||||| || ||||| || ||||| Sbjct 177191 GACTTCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 177241 >seq2360 Length=898569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || |||||| ||||||||| |||||||| || || | || | || ||| Sbjct 280511 ACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCC 280452 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||||||| || | || | | |||||| ||| || | || ||||| || | Sbjct 280451 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCTTGA 280392 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | | || || || | | ||| ||||| || ||||| || Sbjct 280391 ATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTG 280332 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||| || |||||| Sbjct 280331 CCAGTCAGGGTTTTCACAAAGATTTGCATC 280302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235731261013