Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1725 114 7e-21 seq2915 113 2e-20 seq2047 113 2e-20 seq2662 111 8e-20 seq2781 109 3e-19 seq2334 107 1e-18 seq2681 104 1e-17 seq1214 100 1e-16 seq48 98.7 5e-16 seq2279 93.3 2e-14 >seq1725 Length=340389 Score = 114 bits (126), Expect = 7e-21 Identities = 80/90 (89%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 11441 AATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| |||||| | ||||||||| | ||||||||||| |||||||||||||||||||| Sbjct 195576 AATACAAAAATTA---TGGCCCATGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCA 195520 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||| ||||||||||||||| Sbjct 195519 CGACGCTCTAACCAGCTGAGCTAATGGGCC 195490 >seq2915 Length=662096 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 11429 AAATATAGAA--TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| |||||| |||||||| | ||||||||||| | || |||||||| ||||||| Sbjct 59662 AAAAATAGAAAGTTAATAAATAT----ATTGGCCCATGCAGGGGTCGAACCTGCGACCTT 59717 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| |||||||||||||||||||| Sbjct 59718 GGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 59760 >seq2047 Length=313033 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||| ||||||||| | || |||||||| ||||||| ||||||||||||| Sbjct 162245 AATAAAAATAAAAAATGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCAC 162304 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 162305 CACGCTCTAACCAACTGAGCTAATGGGCC 162333 >seq2662 Length=126019 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| || Sbjct 75234 AAATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 75175 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 75174 CAACTGAGCTAATGGGCC 75157 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | |||||||||| | || |||||||| ||||||| ||||||||||||| ||| Sbjct 75396 AAAAAT-ATTTTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACG 75338 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 75337 CTCTAACCAACTGAGCTAATGGGCC 75313 >seq2781 Length=732451 Score = 109 bits (120), Expect = 3e-19 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||||| | || |||||||| | ||||||||||| ||||||| ||||||||| Sbjct 152907 AATTAA--AAAAATTATAT-GGCCCATGCAGGGATCGAACCTGCGACCTTGGCGTTATTA 152963 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||| ||||||||||||||| Sbjct 152964 GCACCACGCTCTAACCAGCTGAGCTAATGGGCC 152996 Score = 109 bits (120), Expect = 3e-19 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||||| | || |||||| ||||||||||| | || |||||||| ||||||| || Sbjct 457231 AATATAAAGGTAGTAAAAAC----ATTGGCCCATGCAGGGGTCGAACCTGCGACCTTGGC 457176 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||| |||||||||||||||||||| Sbjct 457175 GTTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 457136 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | || |||||||| ||||||| ||||||||||||| ||| Sbjct 153056 AAAAATAAA--TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACG 153113 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 153114 CTCTAACCAACTGAGCTAATGGGCC 153138 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | || |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 133345 TGGCCCATGCAGGGGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 133404 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 133405 TGAGCTAATGGGCC 133418 >seq2334 Length=223604 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 37793 AAAAA--AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 37850 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| Sbjct 37851 CTCTAACCAGCTGAGCTAATGGGCC 37875 >seq2681 Length=1550842 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 628451 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 628392 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 628391 TGAGCTAATGGGCC 628378 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 11456 TGGCCCA-TGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| || | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 319921 TGGCCCAATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 319862 Query 11515 CTGAGCTAAT 11524 ||||||| || Sbjct 319861 CTGAGCTGAT 319852 >seq1214 Length=393742 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | | |||||| ||||||||||||||||||||||||||||| |||| | Sbjct 34371 TGGCCCATGCAGGTCTTGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 34430 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 34431 TGAGCTAATGGGCC 34444 >seq48 Length=625145 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 557773 AAGTTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 557714 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 557713 CAGCTGAGCTAATAGGCC 557696 >seq2279 Length=263697 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | ||||| || |||||| ||||||||||||||| |||||| || Sbjct 258362 AAAATGGCCCATGCAGGTTTCGAAGCTGCGACCTCCGCGTTATTAGCACGGCGCTCTAAC 258421 Query 11512 CAACTGAGCTAATGGGCC 11529 || ||||||||||||||| Sbjct 258422 CAGCTGAGCTAATGGGCC 258439 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481597797988