Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2537 147 3e-31 seq477 147 3e-31 seq2870 141 1e-29 seq747 136 6e-28 seq26 132 8e-27 seq2576 111 2e-20 >seq2537 Length=808917 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| || || |||||| |||| || || ||||||||| Sbjct 325930 GATAACATCCAGGGTATCACTAAGCCCGCCATTCGTCGTTTGGCCCGGCGAGGTGGAGTC 325989 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | |||||||||| ||| | |||||||||||| ||| | || Sbjct 325990 AAGAGGATTAGCGGCCTTATTTATGAAGAGACTCGCGGTGTTTTGAAGATATTCTTGGAG 326049 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || ||| |||||| || || || ||||||||| ||||||||||| || | Sbjct 326050 AATGTGATCAGAGATGCTGTCACTTACACTGAGCACGCTCGCCGTAAGACTGTTACTGCT 326109 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| |||| |||||||| |||| Sbjct 326110 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTTA 326168 >seq477 Length=42882 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| || || |||||| |||| || || ||||||||| Sbjct 39366 GATAACATCCAGGGTATCACTAAGCCCGCCATTCGTCGTTTGGCCCGGCGAGGTGGAGTC 39425 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | |||||||||| ||| | |||||||||||| ||| | || Sbjct 39426 AAGAGGATTAGCGGCCTTATTTATGAAGAGACTCGCGGTGTTTTGAAGATATTCTTGGAG 39485 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || ||| |||||| || || || ||||||||| ||||||||||| || | Sbjct 39486 AATGTGATCAGAGATGCTGTCACTTACACTGAGCACGCTCGCCGTAAGACTGTTACTGCT 39545 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| |||| |||||||| |||| Sbjct 39546 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTTA 39604 >seq2870 Length=695173 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||||||||| || || |||||||| |||||||| ||||| | Sbjct 546677 GAGACAACATTCAGGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGTGGTG 546736 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || || |||| || || | || | |||||||||||| || | Sbjct 546737 TTAAGAGGATCAGCGGCCTGATCTACGAGGAAACCCGCGGTGTTTTGAAGATATTTTTGG 546796 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | ||| |||||||| ||| ||||||||||| || Sbjct 546797 AGAATGTAATCAGAGATGCTGTTACCTACACCGAGCATGCTCGCCGTAAGACTGTTACTG 546856 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | ||||||||| | || | || ||||||| |||| |||||||| ||| Sbjct 546857 CTATGGATGTTGTCTATGCACTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTT 546916 Query 16698 A 16698 | Sbjct 546917 A 546917 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||||||||| || || |||||||| |||||||| ||||| | Sbjct 554247 GAGACAACATTCAGGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGAGGTGGTG 554306 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || || |||| || || | || | |||||||||||| || | Sbjct 554307 TTAAGAGGATCAGCGGCCTGATCTACGAGGAAACCCGCGGTGTTTTGAAGATATTTTTGG 554366 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | ||| |||||||| ||| ||||||||||| || Sbjct 554367 AGAATGTAATCAGAGATGCTGTTACCTACACCGAGCATGCTCGCCGTAAGACTGTTACTG 554426 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| | || | || ||||||| |||| |||||||| ||| Sbjct 554427 CTATGGATGTTGTCTATGCCCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTT 554486 Query 16698 A 16698 | Sbjct 554487 A 554487 >seq747 Length=476826 Score = 136 bits (150), Expect = 6e-28 Identities = 177/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||| ||||| || || |||||| ||||||| | ||| Sbjct 135488 CTACGTGATAACATTCAGGGTATCACTAAGCCTGCCATTCGTCGTTTGGCTCGAAGAGGT 135547 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | ||| | | |||||||| | ||||| |||| | |||||||| Sbjct 135548 GGTGTGAAGCGTATTAGTGGTCTTATTTATGAAGAAACTCGTGGTGTTCTTAAGATCTTT 135607 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||||| | ||||||| | || || ||||| || | | |||||||| Sbjct 135608 CTAGAGAATGTTATTCGTGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACTGTT 135667 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| | || | || ||||||| | ||||||||||| Sbjct 135668 ACTGCCATGGATGTTGTTTATGCTCTTAAGAGGCAGGGCCGTACTCTCTATGGTTTTGGT 135727 Query 16694 AGTTA 16698 |||| Sbjct 135728 GGTTA 135732 >seq26 Length=628769 Score = 132 bits (146), Expect = 8e-27 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 130570 GCAAAGCGTCACAGGAAAGTTCTTCGGGATAACATCCAAGGAATCACGAAGCCTGCTATT 130629 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || |||||| || || || |||| ||||||| Sbjct 130630 CGTCGTCTTGCTCGAAGAGGCGGTGTTAAGCGTATCAGCGGTCTGATCTACGAAGAGACA 130689 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||| ||| | ||| || || | ||||||| | || || ||| Sbjct 130690 CGTGGAGTCCTCAAGATTTTCTTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAG 130749 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || |||||||| | || ||||| | || | ||||| Sbjct 130750 CATGCGAGGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCTCTCAAGAGGCAAGGA 130809 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||||||||| || |||| Sbjct 130810 AGGACTCTTTATGGTTTCGGTGGTTA 130835 >seq2576 Length=142322 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || || || || ||||||| || || || || Sbjct 117743 GATAACATCCAAGGGATCACAAAACCCGCCATTCGCCGGTTGGCTCGGCGAGGAGGGGTT 117684 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | ||||| || | ||| | |||||||||||| ||| | || Sbjct 117683 AAGAGGATAAGCGGTCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 117624 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | |||||| | || || ||||| ||| ||||||||||| || | Sbjct 117623 AATGTTATTCGAGATGCTGTTACTTACACTGAGCATGCTCGCCGTAAGACTGTTACTGCT 117564 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | || ||||||| ||||||| ||||| |||| Sbjct 117563 ATGGATGTTGTTTATGCTCTTAAGAGACAGGGCCGTACTCTTTATGGCTTTGGTGGTTA 117505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072445193009