Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1325 536 2e-147 seq2002 527 8e-145 seq1658 522 3e-143 seq1113 98.7 1e-15 >seq1325 Length=385796 Score = 536 bits (594), Expect = 2e-147 Identities = 690/943 (73%), Gaps = 9/943 (1%) Strand=Plus/Plus Query 135389 ACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTT 135448 |||| ||| | ||| | || ||| | || |||||||| ||||||| || || ||| Sbjct 7000 ACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAAC-CTT 7058 Query 135449 CTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTG 135506 | | | || || |||| |||||| | || ||||| ||||| |||| || ||||||| Sbjct 7059 ATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTG 7117 Query 135507 ACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTG 135566 | || || || |||| |||| | || |||||| | |||||||| || || || || |||| Sbjct 7118 ATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTG 7177 Query 135567 CTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGC 135624 | |||| ||| || ||| || || || | ||||| ||||| || |||||||| || Sbjct 7178 CCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGC 7235 Query 135625 TTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCT 135684 || ||||||||||| |||| || || ||||||||| ||||| | || | |||| | Sbjct 7236 GTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTT 7295 Query 135685 TATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCG 135744 | ||||| | ||| |||||||| ||||||||||| || ||| ||||||||||| Sbjct 7296 ACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCG 7355 Query 135745 CCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGT 135804 |||||||||| ||| || || ||||| || ||||| || ||||||| ||||||| || | Sbjct 7356 CCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGAT 7415 Query 135805 CTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTT 135864 ||||| |||| ||||| || |||||||||||| || || || ||| | ||||| Sbjct 7416 CTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTT 7475 Query 135865 TAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTT 135924 |||| ||| |||| |||||||| || |||||||| || |||||||| || | |||||| Sbjct 7476 CAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTT 7535 Query 135925 GGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCAC 135984 || || ||||| || |||| || ||||| | |||||||||||| || | || || Sbjct 7536 AGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAAC 7595 Query 135985 CTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGG 136044 |||||| | | | || || || | ||||| || | ||||||| ||| | Sbjct 7596 TTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAG 7655 Query 136045 TCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTT 136104 ||||| ||||| ||||| || ||||| |||||||||||||| ||||| || ||||||| Sbjct 7656 GCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTT 7715 Query 136105 CCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGT 136164 |||||||| ||||||||||||||||| ||| ||| ||| | |||||||||||||| Sbjct 7716 TCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGT 7774 Query 136165 TGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATT 136224 || ||||| |||||| |||| | || | ||| ||||| |||||| | ||||| || Sbjct 7775 AGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTT 7834 Query 136225 CAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGT 136284 ||| |||||||| || | || | | ||||||||||| | | || ||||| ||| | Sbjct 7835 CAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATAT 7894 Query 136285 GCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | || | |||| | |||||||| || ||||| || ||| Sbjct 7895 CATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGT 7937 >seq2002 Length=1023113 Score = 527 bits (584), Expect = 8e-145 Identities = 723/1006 (72%), Gaps = 7/1006 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| ||||||||||| ||| | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCT 167497 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 ||| ||||||||| ||| | || || ||| |||| || ||||| ||||| || | Sbjct 167498 TTCGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || ||||| | |||| | ||||| |||||| | || || | | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | || ||| | | |||| |||||||| || | | Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 ||||||| | || |||| ||| | || || || ||||||||||| || || || | Sbjct 167677 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATG 167736 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || || || || || ||| | || || || ||| | |||| || | | | Sbjct 167737 GTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTT---C 167793 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||||||||| |||||||| || ||||| || || || | Sbjct 167794 AATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 167853 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 |||| || ||||| | ||||| || ||||||||||||| || |||||| | |||| Sbjct 167854 TCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAG 167913 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || |||||| | | || |||| || || ||||| ||||| || || || |||| Sbjct 167914 CTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTC 167973 Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471 |||||||||| || || ||| | | || | ||||| || || ||||||||||| |||| Sbjct 167974 ATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTA 168033 Query 138472 CAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAAC 138531 | |||||||||| ||| | |||||| || || ||||||| || || ||| | | Sbjct 168034 CCGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 168093 Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591 | || |||| |||||||| ||||||||||| || |||||||| | ||||| ||||| | Sbjct 168094 CAACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTT 168153 Query 138592 TTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651 |||| |||||||| ||||| ||||| | || ||||||||| | ||||| || || | Sbjct 168154 TTGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 168213 Query 138652 TGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATG 138711 ||| | |||| ||| | |||| | | ||| | ||| | |||||||| || |||| Sbjct 168214 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATG 168273 Query 138712 ATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCA 138771 | ||| | || || ||||| |||||||| |||||||||||||| || || |||||||||| Sbjct 168274 ACTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCA 168333 Query 138772 AGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACG 138831 | || ||||| | || |||||| | ||||| |||||||| || ||||| ||||| | Sbjct 168334 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 168393 Query 138832 AAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| || | || ||||| || || | || | || |||||||| Sbjct 168394 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1658 Length=355568 Score = 522 bits (578), Expect = 3e-143 Identities = 696/958 (73%), Gaps = 18/958 (2%) Strand=Plus/Minus Query 135383 TGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCT 135442 ||| | || ||||| || ||||| || ||| | || |||||||| ||||||| ||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 135443 ACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCG 135500 || ||| | | | || || |||| |||||| | || ||||| ||||| |||| | | Sbjct 187855 AC-CTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAG 187798 Query 135501 ATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCT 135560 ||||||| || || || ||||||||| | || |||||| | |||||||| || || || | Sbjct 187797 ATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTT 187738 Query 135561 CTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGA 135618 | ||| | |||| ||| || ||| | | || | ||||| ||||| || || || Sbjct 187737 CGGGTACCATTATTCCTACTTTTGCA--GTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 135619 AGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCA 135678 ||| || | ||||||||||| |||| || |||||||||||| ||||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 135679 CTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGG 135738 ||| | | ||||| | ||| |||||||| ||||||||||| || ||| || || Sbjct 187619 CTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 135739 TATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTT 135798 |||||||||||||||| ||| || || | ||| | |||| || |||||||||||||| Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 135799 CCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGG 135858 | || ||||||| |||| ||||| || |||||||||||| || | || ||||| Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 135859 AACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCA 135918 ||||| |||| ||| |||| ||| |||| || |||||||| || |||||||| || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 135919 CATGTTGGGAGTTG--------CTGGGGTCTTCGGTGGTTCTCTGTTCT-CTGCTATGCA 135969 |||||| || || | |||| || ||||| | ||||| |||| ||||||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCA 187321 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| || | || | |||||| | | | || || || || ||||| || | Sbjct 187320 TGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 187261 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || Sbjct 187260 GGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 187201 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || ||||||| |||||| | |||||| |||||||||| ||||||| ||| | Sbjct 187200 CGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTT 187141 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTT 136209 |||||||||||||| || ||||| |||||| ||| | || | ||| ||||| || Sbjct 187140 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTT 187081 Query 136210 CAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAA 136269 |||| | ||||| ||||| |||||||| || | || | | ||||||||||| | || Sbjct 187080 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 187021 Query 136270 CACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 187020 TACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 186963 >seq1113 Length=2548689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 ||| |||||||| ||||||||||| || ||| ||||||||||||||||| ||| ||| Sbjct 1750632 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGAATTGTTGT 1750573 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTT 135796 ||| || ||||| || ||||| | |||||||||||| Sbjct 1750572 CGCATATTCAGCTCCGGTTGCAGTGGCTACTGCTGTT 1750536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627944349155200