Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1325 529 5e-146 seq1658 515 1e-141 >seq1325 Length=385796 Score = 529 bits (586), Expect = 5e-146 Identities = 691/947 (73%), Gaps = 7/947 (1%) Strand=Plus/Plus Query 19317 AACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACT 19376 ||| | |||||| | || |||||||| || | ||||| || |||| | |||| ||| Sbjct 7012 AACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACT 7071 Query 19377 ACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAG 19436 || ||||| | ||||| || || || || | |||||||| ||||| || ||||| Sbjct 7072 TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAA 7131 Query 19437 CCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGC 19496 | |||||||| || || | |||||||||||||||||||| || || | |||| | Sbjct 7132 CTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACT 7191 Query 19497 TCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGG 19556 || || ||||| ||||||||||||| || |||||||| | | | ||||||||| Sbjct 7192 TCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGG 7251 Query 19557 TTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCA 19616 ||||||||||| ||||| ||| |||| |||| | |||| ||| | || |||||| Sbjct 7252 TTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGT 7311 Query 19617 TACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTA 19676 || ||| | |||||||||| || | | | || ||| | || ||||| || Sbjct 7312 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTT 7371 Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCA 19735 |||||| |||| || | |||| ||| || ||| ||||| | | |||| | |||| || Sbjct 7372 GCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGT-TTTCTTGATCTACCTAATTGGTCA 7430 Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795 ||| || ||| ||||||||||||||| || |||||| ||||||| ||||||||| | || Sbjct 7431 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGT 7490 Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855 |||||| || || ||||| |||||||||||||| || | |||| | ||||| ||||| || Sbjct 7491 ATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGT 7550 Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAA 19915 |||| || ||||||| ||||||||| || ||||| ||||| | |||| Sbjct 7551 GTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 7610 Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 |||||| || | ||| ||| || | || || | ||| ||||||| ||||| || Sbjct 7611 GGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAAC 7670 Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035 ||||||||||| ||||| || || || || || ||||||| |||||||||||| ||| Sbjct 7671 TTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTT 7730 Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCT 20095 ||| || ||||||||||||| ||||| | ||| ||| || || || || || ||| | Sbjct 7731 CAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 7789 Query 20096 TACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTC 20155 ||| | | || || | |||||||| |||||| | |||||||| || || ||||| || Sbjct 7790 TACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATC 7849 Query 20156 AGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGT-ATTAAATAGAGCT 20213 ||||||||| ||||| || |||| | || ||||||||| | ||||| | ||| Sbjct 7850 TGTAGTTGATAGTCAA-GGTCGTGTAATTCATACTTGGGCTGATATCATTAACCA-TGCT 7907 Query 20214 AACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCC 20260 ||| | || | ||||||||||| || || ||||||||||||||||| Sbjct 7908 AACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 515 bits (570), Expect = 1e-141 Identities = 714/989 (72%), Gaps = 22/989 (2%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || ||||| |||||| | || |||||||| || | ||||| ||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | |||| ||| || ||||| | ||||| || || || || | ||||| Sbjct 187855 ACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGAT 187796 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| || |||||||| || || | |||||||| ||||||||||| Sbjct 187795 ATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCG 187736 Query 19479 GG-AGCAGTAGTTCCAAGCTCCAATGCAAT---AGGACTGCACTTTTATCCGATCTGGGA 19534 || | || || |||| | | |||| | ||| ||||||||||||| || || || Sbjct 187735 GGTACCATTA-TTCCTACTTT---TGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 19535 AGCCGGCACTT-TAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCC 19593 ||| ||| | | |||||||||||||||||||| ||||| ||| |||| |||| | | Sbjct 187679 AGC-GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTAC 187621 Query 19594 ACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAG 19653 |||| ||| | || |||||| || ||| | |||||||||| || | | ||| Sbjct 187620 ACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 187561 Query 19654 GAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGT 19713 | ||| | || ||||| | || |||||| ||| | | |||| ||| |||||| | Sbjct 187560 GTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT-T 187502 Query 19714 TTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCT 19772 |||| | | |||||| |||| ||||| || ||| ||||||||||||||| | |||||| Sbjct 187501 TTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCT 187442 Query 19773 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTC 19832 |||||||| ||||||||| | |||||| | || || ||||| |||||||||||||| || Sbjct 187441 GGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTT 187382 Query 19833 CACATGCTCGGTGTTG--------CTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGC 19884 |||||| | ||||| | |||| |||||||| | ||||||| |||||||| Sbjct 187381 CACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGC 187322 Query 19885 ACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACT 19944 | || ||||| | ||| | || | |||||| || || ||| ||| || Sbjct 187321 ATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATG 187262 Query 19945 ATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACT 20004 | || || | ||||||||||| ||||| || ||||||||||| ||||| || || || | Sbjct 187261 AGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATT 187202 Query 20005 TTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTC 20064 | | ||||||| ||||||||| || |||||| | |||||||||||||| ||||| Sbjct 187201 TCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCT 187142 Query 20065 TTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTT 20124 | ||| ||| || || || || || ||| ||| | | || || | |||||||| | Sbjct 187141 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCT 187082 Query 20125 TCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATC 20183 ||||| | |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 187081 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATT 187023 Query 20184 CCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGC 20243 || ||||||||| | | || | |||||||| || | ||||||||||| || || Sbjct 187022 AATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 186963 Query 20244 AATGCTCATAACTTCCCACTTGATTTAGC 20272 ||||||||||||||||| || || |||| Sbjct 186962 AATGCTCATAACTTCCCTCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144436431969828