Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1325 432 6e-116 seq1658 378 1e-99 seq559 98.7 2e-15 seq2 91.5 2e-13 >seq1325 Length=385796 Score = 432 bits (478), Expect = 6e-116 Identities = 691/986 (70%), Gaps = 7/986 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACA--AACAACAGAATCTATGTTGGTTGGTTTGGTGTTC 211627 ||||| ||| | |||| ||||| || ||||| | ||| |||| |||||||||||| Sbjct 6985 TTCTGTAACTTGATAAC--CAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTT 7042 Query 211628 TTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCA 211686 | ||||||||| ||| | | ||||||| | ||||| |||| ||||| || || Sbjct 7043 TGATGATCCCAAC-CTTATTGACTGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCT 7101 Query 211687 CCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAAC 211746 |||| || ||||| || || || ||||||| || | || || | | || || ||| Sbjct 7102 CCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAAC 7161 Query 211747 AACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCT 211806 || || || || ||||| || |||| |||| || || || || ||||| ||||| Sbjct 7162 AATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCA 7221 Query 211807 ATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTA 211866 || ||||||||||| | ||||||||||| | ||||| || |||||||| | | | Sbjct 7222 ATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATT 7281 Query 211867 ATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATAC 211926 | | |||| | | || | || || ||||| | ||||||||||| | | Sbjct 7282 GTTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 7341 Query 211927 CGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTC 211986 ||| | |||||||| |||||||| |||||| |||||||| || || |||| ||| Sbjct 7342 CGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7401 Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 | ||| ||| | | |||| | | ||||| || || || || ||||||||| |||| Sbjct 7402 GTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7461 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || | || |||||||| ||| | |||||||| || || || |||||||||||||| Sbjct 7462 ATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAT 7521 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCAC 212166 ||||| | ||| |||||| || ||| |||||| || | | | ||||||||| Sbjct 7522 CCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCAT 7581 Query 212167 GGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 ||||| | || || ||| | ||| | |||||||| || || || | Sbjct 7582 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||| | ||||| ||||| || ||||| || || ||||| ||||| || ||| Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || || | ||||| || ||||| ||||||||| | ||||| ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTA 7760 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || || | ||||| | || ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||| ||||||| ||||| ||||||||||| || |||||| |||| || ||| | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | ||||| || ||| ||||||||||||||||||| ||| | ||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || || |||||||| | ||| |||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGC 7966 >seq1658 Length=355568 Score = 378 bits (418), Expect = 1e-99 Identities = 664/959 (69%), Gaps = 16/959 (2%) Strand=Plus/Minus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTT 211664 ||| |||| |||||||||||| | |||||||| | ||| | | ||||||| | || Sbjct 187888 TATATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCTGTATT 187830 Query 211665 TATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGC 211724 ||| |||| ||||| || || |||| | ||||| || || || |||||||| || | Sbjct 187829 TATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGAACCTGTTTC 187770 Query 211725 TGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGC 211784 || || | | || || || || || || || ||| | || |||| ||| | Sbjct 187769 CGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTACTTTTGCAGT 187710 Query 211785 AATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAA 211844 | || || ||||| ||||| || || ||||| || ||||||||||| | ||||| Sbjct 187709 TGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTGGTTATACAA 187650 Query 211845 TGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGG 211904 ||||||||||| | | | | | ||||| | | || | || || ||||| Sbjct 187649 CGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATGTTATATGGG 187590 Query 211905 AAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTC 211964 | ||||||||||| | |||| |||||||||| |||||||| |||||| |||| Sbjct 187589 TCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTT 187530 Query 211965 AGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATT 212024 ||| | | |||| ||| ||||| ||| | | |||||| | ||||| || ||| Sbjct 187529 AGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATT 187470 Query 212025 CTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGC 212084 | || ||||||||| ||| || || || || |||||||| ||| | |||||| | || Sbjct 187469 TTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTGTATTCTAGGC 187410 Query 212085 AGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTA--------TG 212136 || || |||||||||||||| ||||| || ||| |||||| || ||| | Sbjct 187409 TGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGACCTGGTGTA 187350 Query 212137 TTCGGTGGAGCATTATTCTC-TGCTATGCACGGTTCTCTTGTTACATCTTCACTT--ATC 212193 ||||| | | | |||| ||||||||| ||||| |||| || || | | || || Sbjct 187349 TTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTC-CTTGGTA-ATTTCTAGTTTGATT 187293 Query 212194 CGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAG 212253 | |||||||| | || || || | ||||||| ||||| ||||| ||||| Sbjct 187292 AGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAGAGGAAGAA 187233 Query 212254 ACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCA 212313 || ||||| || || ||||| ||||| || |||| || | ||||| || ||| | Sbjct 187232 ACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAATATACTAGT 187173 Query 212314 TTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGG 212373 |||||| || | ||||||||||||| | || | |||||||| | || | ||| Sbjct 187172 TTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGG 187113 Query 212374 TTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAA 212433 || | || | ||||| | || ||||| |||||| ||||||| ||||| ||||||||| Sbjct 187112 TTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAA 187053 Query 212434 TCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCA 212493 || || |||||| |||| || || |||||||| |||| | ||||| | || Sbjct 187052 TCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCT 186993 Query 212494 AACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||||||||||||||| ||| | ||||| || |||||||| || ||| |||| Sbjct 186992 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 186934 >seq559 Length=502242 Score = 98.7 bits (108), Expect = 2e-15 Identities = 342/522 (66%), Gaps = 29/522 (6%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||| ||| | | ||| | ||||| |||||||| || || || || || ||| ||| Sbjct 34316 GAAGCCTAAATTTGTCATACTTGCAGCTGCTAAAGTTGGGGGAATCCATGCTAATAATAC 34257 Query 194643 CTATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCT 194700 || ||||| || ||||| | || | | || |||||| || ||||| || | || Sbjct 34256 TTACCCTGCTGACTTCATTGCCATTA--ACCTTCAGATTCAAACTAATGTCATCCA--CT 34201 Query 194701 GCATATCGTA---ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCT 194757 ||| | | |||| | | ||||| | ||||| || || || ||||| || ||| Sbjct 34200 -CATCTTTCACCCATGGTGCCGAAAAACTTCTCTTTCTTGGCTCCTCCTGCATTTACCCT 34142 Query 194758 AAGTTT---CCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAA 194814 |||||| || || || ||||| ||| | | | || || ||||||||||| Sbjct 34141 AAGTTTGCTCCTCAG---CCAATTACTGAGTCTGCGCTTCTAACTGGTCCTTTGGAACCC 34085 Query 194815 TCTAAT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG 194873 | ||| |||| ||||| ||||| || || ||||| || | |||||| ||||| ||||| Sbjct 34084 ACCAATGAGTG-GTATGCCATTGCTAAAATTGCAGGAATCAAGATGTGCCAAGCTTATCG 34026 Query 194874 ---TCAGCAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAA 194930 ||| || || | ||||| | || ||||| |||||| |||| || ||||| Sbjct 34025 AATTCAACATAAT---TGGGATGCAGTTTCGGGTATGCCCACTAATTTATATGGCCCTAA 33969 Query 194931 TGATAATTTTGATATTAATAATGGTCATGTATTACCATCACTCATCGCTAAGTTCCACGG 194990 ||| ||||| || | | ||| ||||| || || | | || | ||| |||| Sbjct 33968 TGACAATTTCCATCCTGAGAATTCCCATGTTTTGCCTGCGTTGATTCGGAGGTTTCACGA 33909 Query 194991 ATCACTTGAGAAGAGTGAGCACTGGGTTGTTAAGTTATGGGGTGATGGATCTCCGAAGAG 195050 || | || | |||| | ||| ||| | ||||| || ||||| ||| Sbjct 33908 GGCAAAGGTGAGGGGTGATAAGGAGGTGGTT---GTGTGGGGAAGCGGGTCTCCTTTGAG 33852 Query 195051 AGAGTTCCTTCATGTTGATGATCTAGCAGAAGC--TTGTGTT 195090 |||||| | ||||| |||||||| || || || ||||||| Sbjct 33851 GGAGTTCTTGCATGTCGATGATCTTGCTGATGCTGTTGTGTT 33810 >seq2 Length=2815739 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193947 GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATT 194006 || ||| | ||||| || ||||| ||| |||| || |||| ||||| ||||||||||| Sbjct 2523041 GGCATTTTATTCAACCATGAATCACCACGAAGGGGAGAGAACTTTGTGACTCGTAAGATC 2523100 Query 194007 ACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCTT 194066 || | | | | | |||| | || | |||| | |||| || |||||| | Sbjct 2523101 ACTCGTGCTGTTGGCAGGATCAAGATCGGGCTTCAGAGCAAGCTTTTCCTGGGTAATTTG 2523160 Query 194067 AATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 | || ||||| |||||| ||| || ||||||||||| |||||| | ||| | Sbjct 2523161 CAAGCCTCAAGGGACTGGGGATTTGCAGGAGACTATGTTGAAGCAATGTGGATGATGCTT 2523220 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 |||||||| | || ||||| |||||| | ||||| Sbjct 2523221 CAACAGGAAAAGCCTGATGACTATGTGGTGGCTAC 2523255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807524785452280