Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1325 462 2e-125 seq1658 407 2e-108 seq2002 352 3e-92 >seq1325 Length=385796 Score = 462 bits (512), Expect = 2e-125 Identities = 669/943 (71%), Gaps = 1/943 (0%) Strand=Plus/Plus Query 170706 TTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTG 170765 |||| ||||||||||| || ||||||||| | | ||||| || || || ||| Sbjct 7025 TTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACTTCTGTATTTATTT 7084 Query 170766 TAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTT 170825 |||| ||||| |||||||||| ||| ||||| || || || | |||| ||| | || | Sbjct 7085 TAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGT 7144 Query 170826 CTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAG 170885 || | | || || ||||| || || || ||||| | |||| |||| || |||| Sbjct 7145 CTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAG 7204 Query 170886 GATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAG 170945 | || ||||| ||||| || ||||||||||| | | || |||||||| |||||||||| Sbjct 7205 GGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAG 7264 Query 170946 GTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGAC 171005 ||||||| | || || || | |||| | |||| | | || |||||| | Sbjct 7265 GTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTG 7324 Query 171006 AGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCAC 171065 |||||||||| | | | || || ||| | |||||||| ||| ||||| ||||| | Sbjct 7325 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTC 7384 Query 171066 CTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 171125 | || | || || || || ||| | | || | | | ||||| || || |||| Sbjct 7385 CGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTG 7444 Query 171126 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAAC 171185 |||||||||| ||||| ||||| |||| |||||||| ||| | || ||||| || || | Sbjct 7445 ATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 7504 Query 171186 ACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTC 171245 ||||||| || ||||| || || | ||| ||||||||| ||| |||||| || || Sbjct 7505 ACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTC 7564 Query 171246 TCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGA 171305 | | ||||| ||||| ||||| | || || ||| | | ||||| || || || | | Sbjct 7565 TTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAA 7624 Query 171306 ACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 171365 | || | || | || || | ||| | ||||| |||||||| ||||| ||||| | Sbjct 7625 ATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAG 7684 Query 171366 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 171425 |||||||||| || ||||| |||| ||||| || ||||| |||||||||||||||| Sbjct 7685 CTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTT 7744 Query 171426 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTA 171485 | |||| ||||||| | |||| | |||||||| || | ||||| || || | |||| Sbjct 7745 CTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTA 7803 Query 171486 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 171545 | |||| ||||| |||||| | || || ||||| ||||||||||| || || ||| Sbjct 7804 TTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 7863 Query 171546 ACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 171605 | || | | | || |||| ||| | ||||| || ||| |||| ||||||| Sbjct 7864 AAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAG 7923 Query 171606 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 ||||||||||| | ||||| || |||||||| | ||||||||| Sbjct 7924 TTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGC 7966 >seq1658 Length=355568 Score = 407 bits (450), Expect = 2e-108 Identities = 681/983 (69%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| |||||| || || | || |||| ||||||||||| || |||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC- 187857 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | ||||| || || || ||| |||| ||||| |||||||||| | | || Sbjct 187856 TACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | ||||| ||| | || ||| | | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 ||| | | |||| ||| | |||| || ||||| ||||| || || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || | || |||||||| |||||||| |||||||| | || || || | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | |||| | | || |||||| | |||||||||| | | | ||||| || Sbjct 187616 TTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 187557 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| | ||| | | | || || ||| || ||| | Sbjct 187556 GCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTT 187497 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | || ||| | ||||| || ||| | |||||||||||| |||| ||||| ||||| Sbjct 187496 GATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTAC 187437 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||| ||| | || ||| | || || |||||||| || ||||| || || || || Sbjct 187436 TTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 187377 Query 171214 GGCAGGTGTAGCAGGTA--------TGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 | ||||||||| ||| | ||||| | ||| | ||||| ||||| ||| Sbjct 187376 GTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGT 187317 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || | ||| | | || || || || || || || || | || | || Sbjct 187316 TCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGT 187257 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| ||||| ||||||||||| || |||| Sbjct 187256 TACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCC 187197 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||| ||||| || ||| | |||||| |||||||||| |||||||||||| | ||| Sbjct 187196 CGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCT 187137 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | |||||||| || | ||||| | || | ||||| |||| ||||| |||||| Sbjct 187136 GCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAAC 187077 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA 171565 | || || ||||| ||||||||||| || || ||| | || | | || Sbjct 187076 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 187017 Query 171566 TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCA 171625 |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||||| Sbjct 187016 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 186957 Query 171626 CACAACTTCCCACTAGACCTAGC 171648 || |||||||| ||||||||||| Sbjct 186956 CATAACTTCCCTCTAGACCTAGC 186934 >seq2002 Length=1023113 Score = 352 bits (390), Expect = 3e-92 Identities = 708/1049 (67%), Gaps = 22/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| | | ||||| |||||| ||| || |||||||| || | | Sbjct 167417 AAAAAGATTTATTTGATAGTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAG 167476 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | |||||||| || || || || | | ||||||| | || | ||||||||||| || Sbjct 167477 GTTGGTCTGGGCTATTGCTCTTTCGT-GTGCTTATTTCGCCTTAGGAGGTTGGTTTACAG 167535 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 167536 GTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTT 167595 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || || ||||| || |||| || || |||| | || | | | || | |||||| Sbjct 167596 GCAATTTCTTAACCGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGT 167655 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| || || ||||||||||| || || |||| ||||||||| || || | Sbjct 167656 TACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 167715 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 ||| ||||| || | ||||| | || | ||| |||||||| ||| | | || || | Sbjct 167716 GGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCG 167775 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 || |||| || ||| | || ||||| || ||| | ||||| || | |||| Sbjct 167776 AGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTG 167835 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || | || ||||| |||||| |||||||| | |||||||||| |||| Sbjct 167836 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCAC 167895 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||| | ||||| || ||||| | ||| | || | || || || || ||| Sbjct 167896 CTAGTTTTGGTATAGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATT 167955 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || || |||||||||||||||||||| || || ||| || | || | || |||||| Sbjct 167956 GGACACTGAATCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTAT 168015 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || ||||| || || ||| | || | || | ||||| || || Sbjct 168016 GCGCTATTCATGGCGCTACCGTAGAAAATAATTTATTTGAAG------------ACGGTG 168063 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | || ||| |||| ||| | || || | || || || | |||||||||| Sbjct 168064 ATGG-----GGCAA-ATACA---TTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTT 168114 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || ||||| || || ||||| | || ||||| || | Sbjct 168115 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATA 168174 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 168175 AATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 168234 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||| | || | ||||| | || || ||||| | || || || || Sbjct 168235 TTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCC 168294 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || |||||||| |||||||| || || ||||| | || |||| Sbjct 168295 GTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAG 168354 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 168355 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 168414 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | || || || ||||| || ||| Sbjct 168415 AGGTTCTACCCCGTGGAAACGCTCTTTAA 168443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570247322251320