Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq958 113 4e-20 seq758 107 2e-18 seq2448 102 8e-17 seq2306 87.8 2e-12 seq1925 82.4 7e-11 >seq958 Length=433838 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | ||| | ||||| Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || |||||||| | |||||| ||||| ||||||||||| || || || || Sbjct 312072 TCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 312013 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || |||||| Sbjct 312012 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 311954 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || ||||| ||| | || || || || Sbjct 311953 CAACATTCAGAAGGAATCCACTCTTCACCTTGTTCT 311918 >seq758 Length=475707 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | || ||||||| Sbjct 367806 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 367747 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| |||||| ||||||||||| || || || || Sbjct 367746 TCGGACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 367687 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||||| || ||| || || |||||||| | | || | || |||||| Sbjct 367686 CAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCG-CACTTTAGCCGACTA 367628 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | || || || || Sbjct 367627 CAACATCCAGAAGGAATCGACTCTTCACCTTGTTCT 367592 >seq2448 Length=870776 Score = 102 bits (112), Expect = 8e-17 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||||| ||| | || ||| | || | |||||| Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 350352 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 350411 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943 |||||| | | || | | || |||||| | ||||||| |||| || | || || | Sbjct 350412 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 350469 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | |||||||| || ||||| || | ||| |||| || ||||| | || || Sbjct 350470 ACAACATTCAGAAGGAATCCACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 350521 >seq2306 Length=232912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | ||||| |||| | || Sbjct 177697 ATGCAAATCTTTGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTTGAGAGTTCT 177638 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 177637 GACACCATTGACAATGTCAAGACTAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 177578 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || || | || ||| ||||| || || || | ||| | | ||| ||||| || Sbjct 177577 CAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCT-AGCTGACTACAA 177519 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| |||| || || || | || || ||||||| Sbjct 177518 CATTCAAAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGGGGAGGAA 177469 >seq1925 Length=318408 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/240 (68%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | || || || || || ||||| ||| | ||||| | || | || | | Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | ||||||||||| | ||||| |||||| || || || || || || || |||| Sbjct 245672 A-GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATC 245730 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | |||||| | || | | || || || ||||| |||| || | | | ||||| | Sbjct 245731 AGCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACA 245790 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATAT 27003 |||||||||| || ||||| | || |||| || | | |||||||||| |||||| Sbjct 245791 ACATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAATGCAAATAT 245850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478644372377360