Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2659 104 6e-17 seq558 84.2 6e-11 >seq2659 Length=772501 Score = 104 bits (114), Expect = 6e-17 Identities = 338/522 (65%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAAC 22492 ||||||| ||||| |||||||| || ||||| | || | ||||| || || Sbjct 20748 TTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCAGAATCATTTGCTGAGA 20807 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | | ||||| |||||| |||||||| |||||||| || || ||||| | |||| Sbjct 20808 GGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTTGCTCCATCT 20867 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| ||||| |||| | ||||||||| |||| || || || ||| | || | Sbjct 20868 TCTGGCTTAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCGAACGAGCTGATATCGC 20927 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA-TCATTCAT 22671 |||| || || |||||| || ||||| ||| || | || | | || | | | Sbjct 20928 GAGACGAAGGGCTTCATTGTGACTTTGCTTGTCTGTTGTACAG----CTTACTGAAGAAG 20983 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || || || | || | | || | | ||||||| || | || || Sbjct 20984 AAGCTGAGTGTGGAGAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATCGAGCGAGAG 21043 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || | || ||| | || || | || |||| || || || |||||| Sbjct 21044 TTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAG 21103 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| | ||||||||||| | || || | | ||||| || | |||| || || Sbjct 21104 TACATTGAGTTTGTTGCAGACAGACTGTTGGCTGCGCTCGGGTACGAAAAGGTTT---AC 21160 Query 22852 GTCGTT---AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 | ||| || ||||| || |||||||| | || || ||| |||| ||||| |||||| Sbjct 21161 GGAGTTCAGAACCCATTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTC 21220 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || |||||||| || || || ||||| ||||||| Sbjct 21221 TTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATG 21262 >seq558 Length=1338247 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239 ||||| || ||||| ||| |||||||||| ||||||| || ||| || ||||| Sbjct 391734 GATTCATGTAACCGGAAGAGCAACCAGCAGAACCTTGGCACCATTAAGTCTTCAAACCTG 391675 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 || || ||||||||||| |||||| ||| || ||||| || |||||| | || || Sbjct 391674 TGCACTGAGATTATTGAGTACACCAGTCCAACAGAAACTGCTGTGTGTAACTTGGCATCT 391615 Query 364300 ATCGCGCTTCC 364310 || || ||||| Sbjct 391614 ATTGCTCTTCC 391604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303303285256166