Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq958 105 6e-18 seq1925 102 7e-17 seq2448 98.7 9e-16 seq2306 98.7 9e-16 seq758 96.9 3e-15 seq2360 86.0 5e-12 >seq958 Length=433838 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | |||||||| || Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | |||||| ||||| |||||||||||||| || || || Sbjct 312072 TCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 312013 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || ||| || Sbjct 312012 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 311954 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 |||||||| || ||||| || |||| Sbjct 311953 CAACATTCAGAAGGAATCCACTCTTCA 311927 >seq1925 Length=318408 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || ||||| ||| | || || | || || ||| | Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| |||||| || || || ||||| || || ||||| Sbjct 245672 AGACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCA 245731 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || ||| |||| | | || ||||| ||||| |||| || | | | || || || Sbjct 245732 GCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAA 245791 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| || |||||| |||| || ||| | | || ||||||||| Sbjct 245792 CATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGA 245840 >seq2448 Length=870776 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||||| ||| | || ||| | || ||||| | Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | |||||| ||||| |||||||||||||| || || ||| Sbjct 350352 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 350411 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATT 24165 ||||| | | || | | || || ||| | ||||||| |||| || | || |||| Sbjct 350412 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 350469 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||| || ||||| || ||||||| ||| Sbjct 350470 ACAACATTCAGAAGGAATCCACGCTTCATTTGGTG 350504 >seq2306 Length=232912 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || ||||| | |||||| | || || ||| Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| || ||| ||||| |||||||| || || || || Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 176667 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||||| | ||||||||| || ||||||| || | | ||||| || Sbjct 176666 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAA 176607 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || |||| || ||| | ||||||| |||||| Sbjct 176606 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGA 176558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | ||||| || | || ||| ||||||||||| | Sbjct 177242 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 177183 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || || || | ||||| |||||| ||||| || || || || || || || Sbjct 177182 CGATACTATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 177123 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | || ||| ||||| |||||||||| | | | | || || || Sbjct 177122 ACAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACCCTTGCTGACTACAA 177063 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || || || ||| ||||||| ||| Sbjct 177062 CATCCAGAAGGAGTCCACACTTCATTTGGTG 177032 >seq758 Length=475707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | || || || || Sbjct 367806 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 367747 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | |||||| |||||| ||||||||||| || || || || Sbjct 367746 TCGGACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 367687 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || |||| || ||| ||||| |||||||| | | | || | || ||| || Sbjct 367686 CAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCG-CACTTTAGCCGACTA 367628 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| || |||| Sbjct 367627 CAACATCCAGAAGGAATCGACTCTTCA 367601 >seq2360 Length=898569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||||||| | ||||| || | | Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| || ||||| || || || || || || Sbjct 280591 GACACCATTGAGAATGTGAAGACAAAGATACAGGATAAAGAGGGGATCCCACCAGACCAG 280650 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| || || ||||| || || |||| | | | | || |||||| Sbjct 280651 CAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 280710 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| | ||||| || | | ||||| ||||| Sbjct 280711 ATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGGGGAGG 280757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||||||| | || ||| | |||||||| | Sbjct 280759 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTCGAAAGCTCT 280818 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| || || ||||||| |||||||| || || || || || || Sbjct 280819 GACACTATCGATATCGTTAAGACAAAGATTCAGGACAAAGAGGGAATCCCACCAGACCAG 280878 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | || ||||| | || |||| | | | | | || ||||| || Sbjct 280879 CAGAGGCTGATCTTTGCAGGGAAGCAGTTGGATGATGGCCGGA-CATTGGCTGATTACAA 280937 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||||||| | || ||||| | | ||||||||||| Sbjct 280938 TATCCAGAAGGAATCTACATTGCACCTAGTGCTCCGGTTGAGAGGAGG 280985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920212347015