Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1558 122 8e-23 seq958 116 3e-21 seq758 116 3e-21 seq2306 113 4e-20 seq1925 105 6e-18 seq2448 104 2e-17 seq2360 98.7 9e-16 >seq1558 Length=1070493 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| | || | |||||||||||| || |||||||| ||| Sbjct 239378 CCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 239319 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||| || || ||| |||| | |||||||||||| |||||| Sbjct 239318 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 239259 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | ||| || | Sbjct 239258 ATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACC 239199 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || ||||| ||||| ||||| |||||||| Sbjct 239198 TCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCAT 239152 >seq958 Length=433838 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || || ||||| ||||||||||| ||| Sbjct 311903 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCT 311962 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || ||| |||| | ||| || ||||| || ||| Sbjct 311963 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 312022 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || |||| | || | ||||| | ||| |||| Sbjct 312023 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGACT 312082 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||||||| ||||| ||||| ||||| |||||||| Sbjct 312083 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 >seq758 Length=475707 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||| ||||| || |||||||| ||| Sbjct 367577 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCT 367636 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || ||| | || | || || ||||| || ||| Sbjct 367637 AAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGG 367696 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| || ||| |||| | || | || || | ||| || | Sbjct 367697 ATTCCTTCTTTGTCTTGGATCTT-TGCTTTGACATTGTCGATTGTGTCCGAGGATTCTAC 367755 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||||||| ||||| ||||| ||||| |||||||| Sbjct 367756 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 367803 >seq2306 Length=232912 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| ||||| ||||| | || |||||||| || |||||||| ||| | Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || || | ||||||||| || || Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||| | | || | || |||| | ||| | Sbjct 176907 ATACCTTCCTTGTCCTGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 176966 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| || || || |||||||||||||| Sbjct 176967 TCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| || ||||| || || | ||| ||||||||||| || |||||||| | | Sbjct 176559 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATC-CGC 176617 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | || || ||||||||||| || | || || | ||||||||| || || Sbjct 176618 AAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 176677 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||| ||||| | || | || || | ||| | Sbjct 176678 GATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAAC 176737 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || ||||| | || || |||||||||||||| Sbjct 176738 CTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| |||||||||||||| Sbjct 176331 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 176390 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| ||||| |||||||| || || |||| || | ||||||||| || ||| Sbjct 176391 AGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 176450 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||| | | ||| | Sbjct 176451 ATCCCCTCCTTGTCCTGAATCTTAGCCTTTACATTATCAATTGTATCCGAGCTCTCAACC 176510 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || ||||||||||| Sbjct 176511 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 176557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCG 131077 ||| ||||| | || | || |||||||||||||||||||| || ||| | ||| || Sbjct 177482 ACGGAGCACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAGTCAGCT-AGGGTTCGGC 177540 Query 131078 AGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTT 131137 |||||| ||||| || || ||| |||| | | |||||||| || || |||||||| | Sbjct 177541 CGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCT 177600 Query 131138 TGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 |||| ||| || ||||| | || | || || | ||| | |||| || | Sbjct 177601 TGTCTTGGATCTTAGTCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGAGTGA 177660 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || || || || || || || ||||| Sbjct 177661 TGGTCTTTCCAGTAAGGGTCTTCACAAAGATTTGCAT 177697 >seq1925 Length=318408 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| ||||| | ||| | ||| |||||||| |||||||||||||| Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| |||||| |||||||| || || |||| | | ||| ||||| || || Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| |||| | || | || |||| | || | Sbjct 245491 ATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 245432 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 245431 TCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCATG 245384 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || | || | ||| || ||||| ||||||||||| || Sbjct 246069 AGCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTG 246010 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| |||||| | |||||| || || | || || | ||||||||| |||| Sbjct 246009 CCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAG 245950 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | |||||||| ||||| || || ||||| | || | ||| || | | ||||| Sbjct 245949 GAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGTGTCTGAGCTCTCGA 245890 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | || || || || || ||||| Sbjct 245889 CCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCAT 245841 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||||| || || | || | |||||||||||| || ||||||||||| Sbjct 245156 GCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 245097 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || || ||||| || || |||| || | ||||||||| || || Sbjct 245096 AAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 245037 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||| |||| | || | || || | ||||| Sbjct 245036 AATACCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAATTCTCGAC 244977 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || || ||||||||||| Sbjct 244976 CTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 >seq2448 Length=870776 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGA 131078 || ||||| ||||| | || || ||||| |||||||||||||| || || | | | Sbjct 350509 CGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCA 350450 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || | || || || || ||||||| || || || || || ||||| |||||||| Sbjct 350449 -TCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTT 350391 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || |||| | || | || |||| || |||| || | ||| | Sbjct 350390 GTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTAT 350331 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||| ||||| ||||| |||||||||||||| Sbjct 350330 GGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 350295 >seq2360 Length=898569 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || ||||| || | || ||||||||||| |||||||| ||| Sbjct 280529 CCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 280470 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | |||||| || ||| |||| | | |||||||||||| || Sbjct 280469 AGAGTTCTGCCA-TCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGG 280411 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||||| ||||| | ||| | ||| || | | ||||| Sbjct 280410 TATACCCTCCTTATCTTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGAC 280351 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| || || || ||||| Sbjct 280350 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | ||| || ||||||| || | || || ||||| || || |||||||| Sbjct 280986 GCCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGC 280927 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||| ||||| |||| | | ||||||||| || || Sbjct 280926 CAATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGG 280867 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||| |||||||| ||| | | || ||| | || | ||| || | | |||| Sbjct 280866 GATTCCCTCTTTGTCC-TGAATCTTTGTCTTAACGATATCGATAGTGTCAGAGCTTTCGA 280808 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || ||||| || |||||||||||||| Sbjct 280807 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || ||||| |||||||||||||| | Sbjct 281441 CCCCCACGAAGACGGAGAACAAGATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGCC 281382 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| | ||||| ||||| |||| | | ||| ||||| || ||| Sbjct 281381 AAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAAGATGAGCCTCTGTTGGTCTGGGGGG 281322 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | ||| | ||||| | | ||| | Sbjct 281321 ATACCCTCCTTGTCCTGAATCTTGGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACC 281262 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || ||||| |||||||| Sbjct 281261 TCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 281215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995022817920