Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2360 96.9 3e-15 seq2306 89.7 4e-13 >seq2360 Length=898569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||||||||| | ||| || | || ||||| || Sbjct 280505 TGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCCAACTGC 280446 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| ||| |||||| || | ||||| || || ||||| Sbjct 280445 TTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTTG 280386 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | |||||| | ||| || | ||||||||| || || ||| Sbjct 280385 GTCTTGACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTGCCAGTC 280326 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| || ||||| Sbjct 280325 AGGGTTTTCACAAAGATTTGCAT 280303 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||| || | |||| | | ||||| | || Sbjct 177267 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCATCCTCGAGCTGC 177326 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| || ||||| || | ||||| ||||| ||||| Sbjct 177327 TTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTG 177386 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | ||| ||| | |||||| || ||||| || Sbjct 177387 GCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCGAGGGTGATTGTCTTTCCTGTT 177446 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || ||||||||||| ||||||||| Sbjct 177447 AGGGTTTTGACAAAGATCTGCATT 177470 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| || ||||| || || | || | | || Sbjct 176574 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCT 176633 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| |||| | || ||| ||||| || | ||| || ||||| Sbjct 176634 TCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 176693 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | ||| || | | | | ||||| ||| |||| ||| ||||| Sbjct 176694 TGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTC 176753 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||||| || ||||| |||||||||||| Sbjct 176754 TTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 176786 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||||||||||| || | ||| Sbjct 176802 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCC 176861 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || |||| | || ||| ||||| || | || || ||||| Sbjct 176862 TCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 176921 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | |||||| | ||| |||| || ||||| Sbjct 176922 TGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTC 176981 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| ||||||||||| Sbjct 176982 TTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405073124788870