Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2448 125 5e-24 seq2362 123 2e-23 seq2306 122 6e-23 seq958 122 6e-23 seq1558 111 1e-19 seq758 104 2e-17 seq2360 102 5e-17 seq2283 102 5e-17 seq1925 98.7 7e-16 seq59 96.9 2e-15 seq2770 93.3 3e-14 seq2371 93.3 3e-14 >seq2448 Length=870776 Score = 125 bits (138), Expect = 5e-24 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 38083 AATCAT--TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140 |||||| |||| || | | || | |||||||||||| ||| ||||| ||||| || Sbjct 350531 AATCATGGTACCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTT 350472 Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200 |||||| | | | | | || || |||||||| || ||||| |||| ||||||||| Sbjct 350471 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 350412 Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260 ||| | |||| |||||||||||| || || || ||||| | || || || Sbjct 350411 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGA 350352 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || ||||| || || |||||||| || | |||||||||||| |||||||| || Sbjct 350351 TGATTCGACATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCATATT 350292 Query 38321 T 38321 | Sbjct 350291 T 350291 >seq2362 Length=213369 Score = 123 bits (136), Expect = 2e-23 Identities = 85/95 (89%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 211959 AAGCCCGTTCCCTTGGCTGTGGTTTCGCT-GATAGTAGACAGGGACAGTGGGAATCTCGT 212017 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||||||| Sbjct 212018 TAATCCATTCATGTGCGTCACTAATTAGATGACGA 212052 >seq2306 Length=232912 Score = 122 bits (134), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || ||||| || | |||||| ||||| || ||||||||| |||||||||| Sbjct 176555 CATT-CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAAT 176613 Query 38146 CAGACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||| | | || | || || | || || |||||||| || | | || || || Sbjct 176614 CCG-CAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCT 176672 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | ||||| |||||| |||||| |||||| ||| ||||| | || || || ||| Sbjct 176673 GGGGGGATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTC 176732 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||||| || || || |||||||| || ||||| |||||||| Sbjct 176733 TCAACCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 >seq958 Length=433838 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||||||| ||||| ||||| ||||| || | ||| || | || || | ||| Sbjct 311927 TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 311986 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || || |||||||| || | |||| ||||||||||||| || || Sbjct 311987 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG 312046 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || ||||| ||| ||||||| || || ||||||||||| Sbjct 312047 GCTTTGACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTT 312106 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||||||||| |||||||| ||| Sbjct 312107 AGGGTTTTCACGAAGATCTGCATTTTT 312133 >seq1558 Length=1070493 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| || | ||| | ||||| ||||| || |||||| || || ||||| || | Sbjct 239379 ACCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 239320 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || |||| || | ||||||||||| || || || || || || || | || Sbjct 239319 GAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 239260 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || |||||| ||||| || || ||||||||| | || || ||| |||||| Sbjct 239259 GATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAAC 239200 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || ||||| || || | ||||||||||||||||||||| || Sbjct 239199 CTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATCTT 239149 >seq758 Length=475707 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||| || || ||||| || | ||| || |||| || | || Sbjct 367601 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGC 367660 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || ||||||||||| || | |||| ||||||||||| || ||| Sbjct 367661 TTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTT 367720 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 || ||||| | || || || ||| || |||| || || ||||||||||| Sbjct 367721 GCTTTGACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTT 367780 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 | |||||||||||| |||||||| ||| Sbjct 367781 AGGGTTTTCACGAAGATCTGCATTTTT 367807 >seq2360 Length=898569 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| ||||| |||||||||| ||| || | || || ||||| || || ||||| Sbjct 281405 TCCTTCTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAAG 281346 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | ||||| || | ||||| || || |||||| ||| || |||||||||| Sbjct 281345 ATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGTCTTCACATTC 281286 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| | | ||||| || | || ||||| || || || | ||| |||||| Sbjct 281285 TCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACG 281226 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 281225 AAGATCTGCAT 281215 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||| | |||||||| ||||| |||||| ||||| || || || | Sbjct 280759 TACCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTG 280700 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | || || || || || || || | || || || | | Sbjct 280699 CAAGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTG 280640 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||| ||| || ||| ||||||||||| | || || | |||||| Sbjct 280639 GGATCCCCTCTTTATCCTGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAA 280580 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || || || |||| || || || || |||||||| Sbjct 280579 CTTCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 280531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| || | ||| | || | || ||||| || ||||||||||||| | Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || || || || || ||||| || || | || || || | ||| Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| ||| ||| || | | || ||| || ||||| ||| Sbjct 280865 ATTCCCTCTTTGTCCTGAATCTTTGTCTTAACGATATCGATAGTGTCAGAGCTTTCGACT 280806 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| || || | || |||||||| |||||||| Sbjct 280805 TCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | || | |||||||| || || |||||||| || |||||||||| Sbjct 281215 TACCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCAG 281156 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || || | || || || ||||| || | | || || || | | Sbjct 281155 CCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTG 281096 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || || || ||| || ||||||||| | | ||||| ||||||| Sbjct 281095 GAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCCGAGCTTTCAA 281036 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||| || |||||||| || || | || || || || || |||||| Sbjct 281035 CTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCATG 280986 >seq2283 Length=253045 Score = 102 bits (112), Expect = 5e-17 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA----GATAGGGGGTAATCTCGTT 25957 ||||||||||||||||||||||||| || || |||| || | ||| ||||||||| Sbjct 1460 AAGCCCGTTCCCTTGGCTGTGGTTTTGCCGGAGAGTACAGGGACAATGGG-AATCTCGTT 1402 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||| ||||||||||||||||||| Sbjct 1401 AATCCATTCATGCGTGTCACTAATTAGATGACGA 1368 >seq1925 Length=318408 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| ||||| | |||||| ||||| || |||||||||||| ||||| | Sbjct 245843 CATT-CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGT 245785 Query 38146 CAGACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||| | | | || || | || || || ||||| || | | ||| ||||| Sbjct 245784 CTG-CAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCT 245726 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | ||| | ||| || || ||| ||| || ||| ||||| | || || ||| || Sbjct 245725 GGGGGAATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTC 245666 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || |||||||| || ||||| || || ||||| || ||||| Sbjct 245665 TCAACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCAT 245613 >seq59 Length=614426 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 439576 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 439517 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 439516 ACCAGTATTTAGCCTT 439501 >seq2770 Length=737149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || ||||||||||||| | | |||| | || || | || || || | ||| Sbjct 636314 CTCCTTCTGGATATTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGTAAA 636373 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | |||||||| | ||||| || |||||| || ||| || ||| ||||| Sbjct 636374 GATCAACTTCTGTTGATCCGGGGGGATTCCCTCTTTGCCCTGAATCTTGGTCTTAACATT 636433 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGT-AATAGTTTTACCCGTCAAGGTTTTCA 38304 | |||||| || |||||||| || || || ||| ||||| || ||||| || || | Sbjct 636434 GTCGACAGTGTCAGAGCTTTCAACCTCCAAGGTAAATTGTTTTCCCTGTCAAAGTCTTTA 636493 Query 38305 CGAATATCTGCAT 38317 | ||||| ||||| Sbjct 636494 CAAATATTTGCAT 636506 >seq2371 Length=888473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || |||||||| | | | ||| ||||| || | || ||| |||| || Sbjct 99675 CCTTTCTGGATGTTGTAATC-GCTAGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGAAG 99617 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || ||||||||| | | |||||||||||| ||||| ||| || || Sbjct 99616 ATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGTTG 99557 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| | | ||||||| || | || || ||||||||||| | |||||||| Sbjct 99556 TTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACA 99497 Query 38307 AATATCTGCATGTTT 38321 ||||| ||||| ||| Sbjct 99496 AATATTTGCATTTTT 99482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934900424803