Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2659 219 5e-52 >seq2659 Length=772501 Score = 219 bits (242), Expect = 5e-52 Identities = 602/914 (66%), Gaps = 19/914 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || || || || | || || || |||||||| || |||| | || || Sbjct 21250 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||||||||| || ||| |||| |||| | || | ||| | Sbjct 21190 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAA 21131 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || ||| ||||| ||||| || || || |||||| ||||| ||||| || | || Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || || ||||| || |||| | || ||| | || ||| ||| || || | | || Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 32609 AGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATG 32664 || | || ||||| | | | | ||| ||| ||| || ||| | Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 20955 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 | || || || || || || ||||||| || | ||||| || || || | || | Sbjct 20954 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 20895 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATT 32783 |||||| ||||||||||||||||| || ||||| ||||| ||| | | |||||||| Sbjct 20894 GCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 20836 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTATCC 32841 ||||| || ||||| ||||| | ||||| || | | ||| ||| |||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAAT--GATTCTGCACCATCAATCC 20778 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | |||||||||| |||||||| || |||||||| || || || || ||| ||| | Sbjct 20777 AACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 20718 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 ||| | |||| ||| |||||| | ||| || || | | |||| |||||||| | Sbjct 20717 GATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAG 20658 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 | ||||||||||||||||| ||||| || || ||||| | ||| || | || ||| | Sbjct 20657 AGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGA 20598 Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 | ||| | |||| | | || | ||| || ||||| |||||| || || || | Sbjct 20597 CCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGA 20538 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----GTTTATTCCAATCA 33137 | || | | || | || |||| | |||||| | |||| | || | ||| | | Sbjct 20537 AGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTGA 20479 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 | ||||| || | ||| |||||||| | ||||| || || || || || ||||| Sbjct 20478 CGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTTG 20419 Query 33198 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | |||||| | | |||| |||||| || ||| ||||||| ||| |||| | Sbjct 20418 TACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCT 20359 Query 33258 GCAAGGATTGGTTC 33271 | || | ||| || Sbjct 20358 GTGAGAAGTGGGTC 20345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633608135834800