Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1925 129 5e-25 seq2360 120 3e-22 seq2306 120 3e-22 seq958 116 3e-21 seq2448 114 1e-20 seq758 107 2e-18 seq2770 91.5 1e-13 seq2371 89.7 4e-13 >seq1925 Length=318408 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| ||||| || ||| ||||||| | || || ||| || Sbjct 245840 AATGCAAATATTTGTTAAGACCTTGACTGGGAAAACCATCACCTTGGAGGTCGAGAGCTC 245899 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| || || ||||| ||||| ||||| |||||||| Sbjct 245900 AGACACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCTCCTGACCA 245959 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || || || || || || | |||||| ||| || ||||| Sbjct 245960 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGACGGGCGCACTTTGGCAGACTACAA 246019 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || |||||||| || || Sbjct 246020 CATTCAGAAGGAATCCACCCTTCA 246043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||||||||| || ||| | ||||| | || || ||| || Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || | || || | ||| || || || || ||||| || || Sbjct 245672 AGACACCATCGA--CAATGTCAAGGCTAAGATTCA-GGATAAGGAGGGCATTCCCCCAGA 245728 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || | | || ||||| || || || | || |||| | || | | || || Sbjct 245729 TCAGCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTA 245788 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||| || || || || || || ||||| | |||||||||||| Sbjct 245789 CAACATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAA 245841 >seq2360 Length=898569 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || ||| ||||||| | ||||| || ||| Sbjct 280759 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTCGAAAGCTCT 280818 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| || | | |||| | ||| |||||||| || || ||||| ||||| Sbjct 280819 GACACTATCGATATCGTTAAGACAAAGATTCA-GGACAAAGAGGGAATCCCACCAGACCA 280877 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || || |||| || || ||| |||||||| Sbjct 280878 GCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGATGATGGCCGGACATTGGCTGATTACAA 280937 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || | || ||||||| || | |||||||| Sbjct 280938 TATCCAGAAGGAATCTACATTGCACCTAGTGCTCCGGTTGAGAGGAGG 280985 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||| || || ||||||| |||| || ||| | ||| Sbjct 280303 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGACATCT 280362 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | ||| | |||| ||| || || || || || ||||| ||||| Sbjct 280363 GACACTATTGAGAATGTCAAGACCAAAATTCA-AGATAAGGAGGGTATACCACCGGACCA 280421 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || || || || || |||| | ||| | | ||| ||||| Sbjct 280422 GCAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCCGACTACAA 280481 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || ||||| || Sbjct 280482 CATCCAAAAGGAGTCCACACTCCACTTAGTCCT 280514 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| | ||||| | ||||| || || Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| || || || || |||||||||||||| Sbjct 281047 GATACAATTGACAATGTGAAGACGAAGATTCAA-GATAAGGAGGGCATTCCACCTGACCA 281105 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| ||||||| ||||| || || || | || |||| | ||| ||| |||||||| Sbjct 281106 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 281165 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || ||||| || || | || ||||| || Sbjct 281166 CATCCAAAAGGAATCAACCCTGCATTTGGTCCTCCGCCTCAGAGGTGG 281213 >seq2306 Length=232912 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||||||| || |||| || | || || ||| || Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || | || |||| ||| ||||| ||||| || || || || Sbjct 176726 GGACACCATCGA--CAATGTCAAGGCGAAAATTCAG-GACAAGGAAGGCATCCCCCCAGA 176670 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | |||||||||||||| || | ||||||| | ||| | | ||||| Sbjct 176669 CCAGCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTA 176610 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| ||||| || || || || || || ||||| | | || ||||||| Sbjct 176609 CAATATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGAA 176557 >seq958 Length=433838 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| || || || || || | || |||||| |||| || | ||||| || | Sbjct 312134 GAAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAAT 312075 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || || || ||||| || || |||| || | || ||||||||||| || |||| Sbjct 312074 CCTCGGATACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAAGAAGGCATCCCAC 312018 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | |||||||| || | || || ||||| ||||| | ||||||| |||||| | | || Sbjct 312017 CAGACCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCG 311958 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| ||||| || |||||||| || || Sbjct 311957 ACTACAACATTCAGAAGGAATCCACTCTTCA 311927 >seq2448 Length=870776 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || |||||| |||| || | || || || || || Sbjct 350295 ATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCATCC 350354 Query 25059 GACACTATCGAGTCACTGAAGCAA--AAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || || || ||| ||||||||||| || ||||| || | Sbjct 350355 GACACAATCGA--CAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGATC 350412 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || |||||||| ||||||| | || | | ||||||| Sbjct 350413 AACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACA 350472 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || ||||||||||| ||||| ||||| Sbjct 350473 ACATTCAGAAGGAATCCACGCTTCATTTGGTGCT 350506 >seq758 Length=475707 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| || || || || || | || |||||| |||| || | || || || | Sbjct 367808 GAAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAAT 367749 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || ||||| ||||| || || ||||||| | || ||||||||||| || |||| Sbjct 367748 CCTCGGACACAATCGA--CAATGTCAAAGCAAAGATCCAA-GACAAAGAAGGAATCCCAC 367692 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | |||||||| || | ||||| ||||| || || | ||||| | |||||| | | || Sbjct 367691 CAGACCAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCG 367632 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || || ||||| || || || Sbjct 367631 ACTACAACATCCAGAAGGAATCGACTCTTCA 367601 >seq2770 Length=737149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 ||||||||||| || || ||||||| | || || || || || ||| |||| Sbjct 636078 AAGACTTTGACTGGGAAGACCATCACCCTGGAGGTTTAGAGCTCAGATACTGTCGATAAT 636019 Query 25074 CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 |||| |||||| |||||||| |||||| | || ||||| ||| | | || || Sbjct 636018 GTGAAAACTAAAATCCAGGACAAAGAGGGGATTTCCCCGGACCAGCAGAGATTAATCTTC 635959 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 ||||| || ||| | || |||| ||||| ||| || ||||||||||| ||| ||||| Sbjct 635958 GCCGGGAAGCAACTTGAGGATGGACGCACCTTGGCTGACTACAATATTCAGAAAAAATCC 635899 Query 25194 ACGCTACA 25201 || || || Sbjct 635898 ACCCTCCA 635891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/203 (71%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCA-TCACAGTCGAAGTGGAGTCGT 25056 ||||||||||||||||||||||||||| || ||| | | | || | || || || | Sbjct 636507 AATGCAAATATTTGTAAAGACTTTGACAGGGAAAACAATTTACCTTGGAGGTTGAAAGCT 636448 Query 25057 CTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| |||| || || ||| | || | ||| | |||||| || || || || | Sbjct 636447 CTGACACTGTCGA--CAATGTTAAGACCAAGATTCA-GGGCAAAGAGGGAATCCCCCCGG 636391 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||| | | || ||| | || || || | || |||| || ||| | | |||| Sbjct 636390 ATCAACAGAAGTTGATCTTTACTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATT 636331 Query 25174 ACAATATTCAAAAAGAATCCACG 25196 ||||||| || || || || ||| Sbjct 636330 ACAATATCCAGAAGGAGTCGACG 636308 >seq2371 Length=888473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||||||||| || ||| | || |||||| ||||||| | || || || | Sbjct 99482 AAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAAAC 99541 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || | | ||| |||||| |||||||||||| |||| ||| || Sbjct 99542 TAGTGATACCATTAACAACGTCAAGGCTAAAATCCATGACAAAGAAGGCATTCAACCCGA 99601 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||| ||| | || || |||| || || | ||||| || || ||| | ||||||| Sbjct 99602 TCAACTGCGTCTCATCTTCGCCGAAAAGCAGCTTGAAGACGACCGTACTCT-AGCGATTA 99660 Query 25175 CAATATTCAAAAAG 25188 ||| || || |||| Sbjct 99661 CAACATCCAGAAAG 99674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433312087789595