Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07-
18] 3,013 sequences; 337,010,935 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq2002 493 1e-134
seq1325 489 2e-133
seq1658 453 1e-122
>seq2002
Length=1023113
Score = 493 bits (546), Expect = 1e-134
Identities = 712/1003 (71%), Gaps = 1/1003 (0%)
Strand=Plus/Plus
Query 167310 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 167369
||||||||||| | | ||||| || || ||||| || |||||||| || | || |
Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCT 167497
Query 167370 TTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCT 167429
||| ||||||| | || | || || ||| |||| || || || ||||| || |
Sbjct 167498 TTCGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556
Query 167430 GGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 167489
|||||||||| || ||||| | ||| | || ||| ||||| | || || |||
Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616
Query 167490 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 167549
| || ||||||||| | | | | || ||| | | |||| |||||||| || | |
Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676
Query 167550 AGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167609
| || || || | | ||||| || | || || || ||| ||||||| || || || |
Sbjct 167677 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATG 167736
Query 167610 GAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTA 167669
| || || || || ||||| |||||| | || ||||| ||| | | || ||
Sbjct 167737 GTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT 167796
Query 167670 TCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTC 167729
| || ||||| ||||| || || || |||||||| |||||||| ||||| ||||| || |
Sbjct 167797 TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 167856
Query 167730 TCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789
| || ||||| || || ||||| |||||||||||||||| |||||| | ||||| |
Sbjct 167857 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTA 167916
Query 167790 TATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATA 167849
||||| ||||| | || || | || || || ||||| ||||| || || || || ||||
Sbjct 167917 TATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATA 167976
Query 167850 TGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAG 167909
||||||||||||| ||| | | |||| || | || | || || ||||| | ||| |
Sbjct 167977 TGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCG 168036
Query 167910 TAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGA 167969
|||| |||| | | | |||||| ||||| ||||| || ||| || ||| | | |
Sbjct 168037 TAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 168096
Query 167970 CTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTG 168029
| || | || ||||||||||| |||||||| |||||||| || ||||| ||||||||||
Sbjct 168097 CCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 168156
Query 168030 GTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGG 168089
| ||||||| |||||| ||||||| || ||||||||| | || || || || | |
Sbjct 168157 GCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 168216
Query 168090 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACT 168149
| | |||| ||| || |||| | ||||| | || | || || ||||| |||||||
Sbjct 168217 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACT 168276
Query 168150 TTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAA 168209
| | || |||||| | | ||||| || ||||| || |||||||||||||| || ||||
Sbjct 168277 TCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 168336
Query 168210 ACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAA 168269
| || ||| | || ||||| | ||||| |||||||| | ||| || || |||||||
Sbjct 168337 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 168396
Query 168270 ACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312
|| || ||||||| || || || | || | || ||||||||
Sbjct 168397 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439
>seq1325
Length=385796
Score = 489 bits (542), Expect = 2e-133
Identities = 698/971 (72%), Gaps = 11/971 (1%)
Strand=Plus/Plus
Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134
|| || ||| |||||||| |||| |||||||| ||||||| ||||| | ||| |
Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065
Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193
||||| ||||| || || | || ||| | || || |||| || ||||| ||||| ||
Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124
Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 166253
||||| | || | || |||||| | || || ||||| || || || ||||| || |
Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184
Query 166254 CCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTT 166311
|| || || || || || || | ||||| ||||| || ||||||||||| || ||
Sbjct 7185 TCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242
Query 166312 GATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGC 166371
||||| ||| | || ||||| ||||||| | || | || | |||| | | ||
Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302
Query 166372 ATCT-ATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTG 166430
| ||| || ||||||||||| |||||| | || ||| || |||||||| |||||
Sbjct 7303 GTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361
Query 166431 GATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCC 166490
|||| || ||||| || || || |||||||| || | | || ||| || |||| |
Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421
Query 166491 TTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTA 166550
| |||||||| || ||||| | ||||| || || ||| | | || |||||||
Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481
Query 166551 CATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGT 166610
||| |||| ||||| || |||||||||||||| ||||| || || | ||| | |||||
Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541
Query 166611 AGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTC 166670
||| ||||| |||| || || |||| || ||||| || | || ||||| |
Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTC-TA 7600
Query 166671 GCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAG 166729
| | | || | || ||||| ||| ||| ||| || | ||||||| || | ||||
Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660
Query 166730 AAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAAT 166789
| ||||| || || || || || |||||||||||||| ||||| || ||||||| ||||
Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720
Query 166790 ACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCG 166849
| ||| |||||||||||||| || | | ||||||| | || || |||||||| || |
Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779
Query 166850 GTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 166909
|||| |||||||||||| | ||| |||| || ||||| |||||| | || |||||||| |
Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839
Query 166910 TCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCA 166969
||||||| || | | ||| |||| |||||||| | | |||||||| ||| || | |
Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899
Query 166970 ACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGG 167029
||| |||| | ||||||||||| ||||| || ||||||||||| |||||||||| |
Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAG 7959
Query 167030 ATCTTGCTGCT 167040
| || || |||
Sbjct 7960 ACCTAGCCGCT 7970
>seq1658
Length=355568
Score = 453 bits (502), Expect = 1e-122
Identities = 692/974 (71%), Gaps = 20/974 (2%)
Strand=Plus/Minus
Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140
|||||||||||| |||| |||||||| ||||||| || || | ||| | |||||
Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 187838
Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199
||||| || || | || ||| | || || |||| | ||||| ||||| || |||||
Sbjct 187837 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779
Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257
|| || | || |||||| | || || || || || || || ||| | || | || |
Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719
Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317
| | || | | || | ||||| ||||| || || ||||| || | |||||||
Sbjct 187718 TTTTGCA--GTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAG 187661
Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCT-A 166376
||| | || ||||||||||||| | || | || | ||||| | | || | |
Sbjct 187660 TGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCA 187601
Query 166377 TGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTG 166436
|| || ||||||||||| |||||| | || ||| || |||||||| |||||||||
Sbjct 187600 TGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGT 187542
Query 166437 CGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGG 166496
|| ||||| | || | ||||||| || | || || ||| || |||| || | ||
Sbjct 187541 TGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGG 187482
Query 166497 TCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCT 166556
|||||| || | ||| | ||||| || | ||| ||| || ||||||| ||| |
Sbjct 187481 TCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGAT 187422
Query 166557 TGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGG 166616
||| ||| | || |||||||||||||| ||||| || || || ||| | |||||||| ||
Sbjct 187421 TGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 187362
Query 166617 TG--------TATTCGGTGGGTCACTTTTCTCG-GCAATGCACGGCAGTCTCGTTACTTC 166667
|| ||||||| | || |||| || | || ||||| || || | || ||
Sbjct 187361 TGACCTGGTGTATTCGGCCGCTCTCTTT-CTAGTGCTATGCATGGTTC-CTTGGTAATTT 187304
Query 166668 CTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTC 166726
|| | | | | | || ||||| |||| ||| ||| || | ||||||| || || |
Sbjct 187303 CTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGC 187244
Query 166727 AAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCC 166786
|||| ||||| || || || || || |||||||||||||| |||| || ||||||| |
Sbjct 187243 AAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTC 187184
Query 166787 AATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTG 166846
|||| || |||||| ||||||| || | ||||||||| | || || |||||||| |
Sbjct 187183 AATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAG 187124
Query 166847 TCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCA 166906
| ||||| ||||||| |||| | ||| |||| || ||||| |||||| | || |||||||
Sbjct 187123 TAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCA 187064
Query 166907 ACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCC 166966
| |||||||| || | | ||| |||| |||||||| | || |||||||| ||| ||
Sbjct 187063 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCA 187004
Query 166967 TCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTC 167026
| ||||||||| || ||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 187003 TTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTC 186944
Query 167027 TGGATCTTGCTGCT 167040
| || || || |||
Sbjct 186943 TAGACCTAGCCGCT 186930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567210636624800
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |