Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2659 217 2e-51 seq2348 104 3e-17 seq2360 95.1 1e-14 seq2315 87.8 2e-12 seq1669 87.8 2e-12 seq1525 87.8 2e-12 seq2459 84.2 2e-11 seq4 84.2 2e-11 seq2648 82.4 9e-11 seq2304 82.4 9e-11 >seq2659 Length=772501 Score = 217 bits (240), Expect = 2e-51 Identities = 607/919 (66%), Gaps = 32/919 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || ||||||||| | || ||||||||||| ||||| |||| Sbjct 21262 CATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTG 21203 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905 | ||| ||| | | || | | || ||| |||| | ||| |||||| ||| Sbjct 21202 AAGAGAGATCAACTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCC 21143 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | | ||| | ||| || || ||||| || ||||||||| ||||| ||||| Sbjct 21142 G--AGCGCAGCCAACAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAG 21085 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | || || || || || || || | ||| ||| |||||| | || Sbjct 21084 TTCATCCCAACCAGCTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACT 21025 Query 93026 GCTTCTTTCAAGATTTCTATTAC----TCTACTATTTGGTGGTTTTTGTACGACA-TAAT 93080 || || |||| || | || || || | | | || || || ||| Sbjct 21024 GCATCCTTCACTATCCCCTGAACCTTCTCCACACTCAGCTTCTTCTT------CAGTAAG 20971 Query 93081 -TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 |||||| | || |||||||| ||| | ||||||||||| ||||||| ||| || Sbjct 20970 CTGTACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTC 20911 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| |||||||| || | | || || || || ||||| || || || |||||| Sbjct 20910 GAGAAGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTC 20851 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATT-T 93256 || || || || || ||||| || ||||| || | | | || ||||| ||| | Sbjct 20850 CCGGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTCT 20791 Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 || || | ||||| | ||||||||| || || ||||||| |||||| | Sbjct 20790 GCACCATCA------ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATA 20737 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 ||||| || || ||| || | | || |||||| || || || || | Sbjct 20736 GTTTCAATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAA 20677 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||||| ||||||||||| || | || || || || |||||||| || |||||| Sbjct 20676 AGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCG 20617 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | |||||| | | ||| || |||| ||||| | ||||||| || ||||| Sbjct 20616 CGAGCTTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATG 20557 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TT 93555 || || ||||| || || || || | || || | || ||||| | || || || Sbjct 20556 CCGTCAGATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTT 20497 Query 93556 AAGCT--TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 ||| | ||||| | | ||||| ||||||||||||||||||| ||||||| ||| Sbjct 20496 AAGACGGTTTCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAAC 20437 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA 93673 || ||||| |||||||||||||| ||||| || | | | |||| |||||| || || ||| Sbjct 20436 GAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACAT-ACA 20378 Query 93674 -AAACGATTAGGGTTATCT 93691 || | || ||||| ||| Sbjct 20377 GAATCTATCTGGGTTTTCT 20359 >seq2348 Length=2239424 Score = 104 bits (114), Expect = 3e-17 Identities = 89/108 (82%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2135005 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 2135064 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTTTGTT 126369 ||||||||||||||||| ||||||| | | || || ||||| || || Sbjct 2135065 GTGGGTTCGAACCCCACTTCTGACAACTGTCTTGTTAGAATTATTTTT 2135112 >seq2360 Length=898569 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/107 (81%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 706406 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 706347 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||| ||||||| || |||||| || Sbjct 706346 GTGGGTTCAAATCCCACTTCTGAC-AATTATTTTT---ATTTTTATT 706304 >seq2315 Length=918074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 9709 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 9650 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||| |||||| || Sbjct 9649 TGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 9618 >seq1669 Length=1074463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 290615 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 290674 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 290675 GTGGGTTCAAATCCCACTTCTGACA 290699 >seq1525 Length=361964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 105882 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 105941 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 105942 GTGGGTTCAAATCCCACTTCTGACA 105966 >seq2459 Length=1921413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 364740 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 364681 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| |||||| || Sbjct 364680 GCGTGGGTTCAAATCCCACTTCTGACAGAT 364651 >seq4 Length=636788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 304781 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 304724 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 304723 GGGTTCAAATCCCACAGCTGTCAATTTTTT 304694 >seq2648 Length=778764 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 13810 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 13751 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 13750 GCGTGGGTTCAAATCCCACTTCTGACA 13724 >seq2304 Length=925863 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 906629 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 906572 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 906571 TTCAAATCCCACAGCTGTCAACTTTTT 906545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839827230120