Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq958 87.8 1e-12 seq2360 86.0 4e-12 seq2448 82.4 5e-11 >seq958 Length=433838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | ||||| ||||||| |||||||| ||| | ||| ||| || Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || | || || || || ||||| || | || | || Sbjct 312072 TCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 312013 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || ||||| || || ||||| || |||||| ||| | ||||| ||| Sbjct 312012 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 311953 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || |||||||||||||| |||||||| Sbjct 311952 AACATTCAGAAGGAATCCACTCTTCA 311927 >seq2360 Length=898569 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || ||||| || ||| | ||| ||| | | Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| || ||| ||||| ||||| | ||||| || Sbjct 281047 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTG---AC 281103 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||||| || || || || ||| | ||| |||| |||||| Sbjct 281104 CAGCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTAC 281163 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || || |||||||| || || ||| |||| Sbjct 281164 AACATCCAAAAGGAATCAACCCTGCATTTGGT 281195 >seq2448 Length=870776 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 ||||||||||| |||||| | |||||| || ||| | || |||||||| ||||||||| Sbjct 350424 ATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAACATTCAGAAG 350483 Query 22023 GAATCTACTCTTCATATGGT 22042 ||||| || |||||| |||| Sbjct 350484 GAATCCACGCTTCATTTGGT 350503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358111649321602