Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq958 127 2e-24 seq2448 120 3e-22 seq1558 113 4e-20 seq1925 109 5e-19 seq2306 105 6e-18 seq2371 104 2e-17 seq758 100 2e-16 seq2360 89.7 4e-13 >seq958 Length=433838 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | || | || ||||| || ||||||||||| ||| Sbjct 311902 ACCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGC 311961 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| || ||||| || ||| |||||||||| |||||||| || || Sbjct 311962 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 312021 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||||| ||||| ||| | | || | ||| || | ||||||||| Sbjct 312022 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGAC 312081 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 312082 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 >seq2448 Length=870776 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| |||| | || ||||| | ||| ||||| || |||||||||||||| Sbjct 350523 TACCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTG 350464 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || | |||||| | |||||| ||||| |||| | || ||||| || || | Sbjct 350463 CAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTG 350404 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | |||||||||||||| ||||| ||| | | || | ||||||| ||||||| Sbjct 350403 GGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGA 350344 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 350343 CATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 350295 >seq1558 Length=1070493 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| || |||||||| ||||| || Sbjct 239348 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCG 239289 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 239288 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTC 239229 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | |||||| || || | ||| | ||||| || || || ||| Sbjct 239228 ACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTT 239169 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 239168 TTCACGAATATCTGCAT 239152 >seq1925 Length=318408 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||||||||| | ||||| || ||||| || || ||| Sbjct 245581 GTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCGTCCTCAAGCTGCTTTCCA 245522 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||| || ||||||||||| ||||| ||| ||| ||||| Sbjct 245521 GCAAAGATCAGTCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAAT-TTTGGTTTT 245463 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||||| | ||| || || | ||| | || || || || || || Sbjct 245462 GACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTCCCAGTGAGGGT 245403 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 245402 CTTAACAAAAATCTGCATG 245384 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | ||| || |||||||||||| || ||| Sbjct 245125 GTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCTTCAAGTTGCTTTCCA 245066 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||| ||||| ||||| ||| ||| ||||| Sbjct 245065 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAAT-TTTGGTTTT 245007 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | ||||| || | ||| | || || || || || || Sbjct 245006 GACATTGTCAATGGTGTCAGAATTCTCGACCTCAAGGGTGATAGTCTTCCCAGTGAGGGT 244947 Query 114365 TTTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 244946 CTTAACAAAAATCTGCAT 244929 >seq2306 Length=232912 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || || || |||||||| ||| || ||||||| ||| || Sbjct 176805 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCG 176864 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||||||| | || | | ||| ||||| || ||||| ||||| ||||| | Sbjct 176865 AGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 176924 Query 114294 ATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || ||| | | |||| |||||||| | || || |||| || | || || Sbjct 176925 ATCTTC-GTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTT 176983 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || || ||||||||||| Sbjct 176984 CCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 >seq2371 Length=888473 Score = 104 bits (114), Expect = 2e-17 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||||||||| | |||||| |||||||| || || | ||| ||| Sbjct 99674 CTTTCTGGATGTTGTAATCGCT-AGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGAAGA 99616 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTA-GCTGT 114311 |||||||| |||| || || |||||||||||||||| || || || | | ||| Sbjct 99615 TGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGTTGT 99556 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 | || ||| || | | ||| || || | ||| | ||||| || || |||||||| ||| Sbjct 99555 T-AATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACA 99497 Query 114372 AAAATCTGCAT 114382 || || ||||| Sbjct 99496 AATATTTGCAT 99486 >seq758 Length=475707 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | || | || ||||| || || |||||||| ||| Sbjct 367576 ACCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 367635 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||||| || || || || ||| | ||||| || |||||||| || || Sbjct 367636 TAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGG 367695 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||||||||| |||||| ||| | | || | ||||| | |||||| || Sbjct 367696 GATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTGTCCGAGGATTCTAC 367755 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| || || |||||||| Sbjct 367756 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 367803 >seq2360 Length=898569 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || || |||||||| || || || ||| || | || || || Sbjct 280955 GTAGATTCCTTCTGGATATTGTAATCAGCCAATGTCCGGCCATCATCCAACTGCTTCCCT 280896 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || || || |||||||| ||||||| || || Sbjct 280895 GCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGAATCTTT-GTCTT 280837 Query 114306 AGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | || | ||||| | | |||||| |||| ||| | ||||| || || ||||| Sbjct 280836 AACGATATCGATAGTGTCAGAGCTTTCGACTTCCAGGGTGATGGTTTTTCCAGTGAGAGT 280777 Query 114365 TTTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 280776 CTTCACGAAAATCTGCAT 280759 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | ||| | |||||||| || |||||||||||||| Sbjct 281442 ACCCCCACGAAGACGGAGAACAAGATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGC 281383 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || ||| ||| || | ||| || || || ||||||| | ||||||||| || || Sbjct 281382 CAAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAAGATGAGCCTCTGTTGGTCTGGGGG 281323 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| |||||| || | | |||| || || | | || || Sbjct 281322 GATACCCTCCTTGTCCTGAATCTTGGTCTTCACATTCTCAATTGTATCAGAAGTCTCAAC 281263 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || || || || || |||||||| Sbjct 281262 CTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 281215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420118972270956