Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2659 158 2e-33 >seq2659 Length=772501 Score = 158 bits (174), Expect = 2e-33 Identities = 416/630 (66%), Gaps = 14/630 (2%) Strand=Plus/Plus Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||||| || |||| ||| |||| || |||||||||||||| |||||||||||||| Sbjct 20505 ACGAACAGCATTTCATCACCCACATCCTTGCCTTCTTCGCCGCATCTGACGGCATAGTTC 20564 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || |||||||||||||| ||| ||| || ||| |||| Sbjct 20565 TCGAGAATCTCGCCGGAAGATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCGCGCTTTCT 20624 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | |||||||| ||||| | || | | | Sbjct 20625 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 20684 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | || ||| ||| | | | ||| | || || || || || || || | Sbjct 20685 CTTATATCAAAGATTC---TAACCTTAAAACCCATCTTTTTCGTGCAATTGAAACTATCC 20741 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || | ||||||||||| || ||||| || ||||| || || | || | | | Sbjct 20742 CTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCAGA---ATCAT 20798 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTC 42752 | | |||||| | | || ||| | || || || || ||||||| |||| | || Sbjct 20799 TTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTT 20858 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | ||||||||||||||| || || | || ||||| || | |||||||||||||| Sbjct 20859 G-CTCCATCTTCTGGCTTAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCGAACGAG 20917 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || | ||||| ||||| ||| | |||||||| || ||||| | ||| Sbjct 20918 CTGATATCGCGAGACGAAGGGCTTCATTGTGACTTTGCTTG---TCTGTTGTACAGCTTA 20974 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || | | | |||| |||| ||| | || || | | ||| || || || ||| Sbjct 20975 CTGAAGAAGAAGCTGAGTGTGGAGAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATC 21034 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| |||||| | || | |||| || ||| ||||| || |||||| || || Sbjct 21035 GAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTG 21094 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 ||| | ||||||| ||| || || ||| Sbjct 21095 ATGAGTCAGTACATTGAGTTTGTTGCAGAC 21124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303633824880