Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1558 132 1e-25 seq758 127 5e-24 seq2306 118 3e-21 seq2360 105 2e-17 seq1925 105 2e-17 seq2770 102 2e-16 >seq1558 Length=1070493 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || || |||| || || || ||||| || ||||||||| Sbjct 239378 CCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 239319 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| |||||||| | |||||||| |||||||| |||||||| || ||||| Sbjct 239318 AGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGG---TCTGGA 239262 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || || ||||| || | ||||| || || || | || ||||| Sbjct 239261 GGGATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCA 239202 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| || || || || |||||||||||||| Sbjct 239201 ACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCAT 239152 >seq758 Length=475707 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || ||| || ||||| || |||||||| Sbjct 367577 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCT 367636 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| |||||||| | || ||||| ||||| || || || ||||| |||| Sbjct 367637 AAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGG 367696 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || ||||| || ||||| || || || || | || |||||||| Sbjct 367697 ATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTGTCCGAGGATTCTACC 367756 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || || || || || || ||||| ||||||||| Sbjct 367757 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATT 367804 >seq2306 Length=232912 Score = 118 bits (130), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||||| ||| || || ||||| || ||||| || Sbjct 177015 CCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 177074 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || ||||| |||||||||| | |||||| |||||| Sbjct 177075 AGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGG---TCTGGG 177131 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 || || || || || || || || | || || || || |||| |||| ||| Sbjct 177132 GGAATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTC--- 177188 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| ||||| |||||||| || ||||||||||| || || |||||| Sbjct 177189 TCGACTTCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATT 177242 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| ||||| || || || || || | || ||||| |||||| Sbjct 177279 TCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 177338 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || |||||| ||||| || || || || ||||| || || ||| Sbjct 177339 ATCAGCCTTTGCTG---GTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGACG 177395 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| |||||||| ||||| ||||| || || || || ||| Sbjct 177396 TTGTCAATGGTGTCGGAGCTTTCCACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTG 177455 Query 288460 ACGAATATCTGCATT 288474 || || ||||||||| Sbjct 177456 ACAAAGATCTGCATT 177470 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| || || || || || | ||| ||||| | || || || || || Sbjct 176595 TCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAA 176654 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || ||| ||||| ||||| || ||||| |||||||| || || Sbjct 176655 ATCAACCTCTGCTG---GTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTCGCCTTGACA 176711 Query 288400 TTTTCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| || || || || || || ||||| ||||||| ||| Sbjct 176712 TTGTCGATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGGTCTTTCCGGTCAAGGTC 176768 Query 288457 TTGACGAATATCTGCATT 288474 |||||||| ||||||||| Sbjct 176769 TTGACGAAAATCTGCATT 176786 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| || || || || ||||| || | |||||||| |||||| Sbjct 177507 TCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAAG 177566 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || |||||| |||||||| || || ||||| || | || || Sbjct 177567 ATCAGCCTTTGCTG---GTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACA 177623 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| || || ||||| ||||| ||||| || || || ||| Sbjct 177624 TTGTCAATGGTGTCAGAACTC---TCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTC 177680 Query 288457 TTGACGAATATCTGCAT 288473 || || || || ||||| Sbjct 177681 TTCACAAAGATTTGCAT 177697 >seq2360 Length=898569 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| || || || || || || || | || || |||||||| Sbjct 280721 TCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAA 280662 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || |||||| || ||||||||||| || || | ||||| || Sbjct 280661 ATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTATCCTGTATCTTTGTCTTCACATTC 280602 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| | || |||||||| || |||||||||||||| Sbjct 280601 TCAATGGTGTCGGAAGTTTCAACTTCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACA 280542 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 280541 AAGATCTGCAT 280531 >seq1925 Length=318408 Score = 105 bits (116), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| |||||||| || || || || | || ||||| || ||| Sbjct 244891 TCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 244832 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||||| ||||| || ||||| || || |||| || || Sbjct 244831 ATCAGACGCTGCTG---GTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAACA 244775 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| || || ||||| || || || || ||||| |||||| Sbjct 244774 TTGTCGATGGTGTCAGAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTC 244718 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 244717 TTAACGAAGATTTGCAT 244701 >seq2770 Length=737149 Score = 102 bits (112), Expect = 2e-16 Identities = 155/218 (71%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| || ||| || ||||| ||||| || Sbjct 635867 CCACCACGGAGACCAAGGACAAGGTGGAGGGTGGATTTTTTCTGAATATTGTAGTCAGCC 635926 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || | ||| || || |||||||| | | ||| || || ||| Sbjct 635927 AAGGTGCGTCCATCCTCAAGTTGCTTCCCGGCGAAGATTAATCTCTGCTGG---TCCGGG 635983 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || ||||| ||||||||||| | |||||| || || | || ||| |||| Sbjct 635984 GAAATCCCCTCTTTGTCCTGGATTTTAGTTTTCACATTATCGACAGTATCTGAGCTC--- 636040 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 | || || || ||||| |||||||| |||| |||||| Sbjct 636041 TAAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTT 636078 Score = 84.2 bits (92), Expect = 5e-11 Identities = 140/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||| || || || || || || | || | |||||||| |||||| Sbjct 636533 TCCTTCTGGATGCTATAATCCGCAAGGGTTCGGCCATTCTCAAGCTGTTTTCCAGCGAAG 636592 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| || || |||||||| || ||||| | || || Sbjct 636593 ATCAGACGCTGCTG---ATCTGGGGGAATCCCCTCTTTATCTTGAATTTTGGTCTTAACA 636649 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || ||||| || || | || || || || || Sbjct 636650 TTATCAATTGTATCAGAACTC---TCGACCTCGAGAGTCATGGATTTGCCAGTTAGGGTT 636706 Query 288457 TTGACGAATATCTGCATTAT 288476 ||||| || || ||||| || Sbjct 636707 TTGACAAAAATTTGCATCAT 636726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179608860547814